Sinorhizobium fredii NGR234: NGR_c10650
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Entry
NGR_c10650 CDS
T00888
Name
(GenBank) metal dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rhi
Sinorhizobium fredii NGR234
Pathway
rhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NGR_c10650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhi03019
]
NGR_c10650
Messenger RNA biogenesis [BR:
rhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NGR_c10650
BRITE hierarchy
SSDB
Ortholog
Paralog
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GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ACP24851
UniProt:
C3MA72
LinkDB
All DBs
Position
1127165..1128832
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AA seq
555 aa
AA seq
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MAQEEELVFLPLGGVGEIGMNLGLYGYGSPGSRQWIMVDCGVTFPGPELPGVELVLPDIS
FLAEERRNLKAIIITHAHEDHYGALNDLWPGLNVPVYASPFTAGMLEAKRDFEKSRGEIP
ITIFKAGDRINVGPFSIEAVGVNHSIPEPMSLVIRTPLGTVVHTGDWKIDLEPSLGPITN
EARFRQVGEEGVLALVCDSTNALRDGVSPSEREVSESLAKIIADAEGRVGITTFSSNVGR
IRSVAEAAEAAGREVLLLGSSMKRVVAVARDLGIMEGLKPFLAEDEFGYIPRDKVVVILT
GSQGEPRAALAKIARDEMRNVAFSAGDTIVFSSRTIPGNEKAINDIKNGLIEQGIHIITD
SEALVHVSGHPRRNELQQMYQWLKPEIVVPVHGEAAHLTAHAELALHSGIASVPRLRNGE
ILRLAPGPAGVVDEARHGRIYKDGTLIGDFDEMGIGERRKLSFAGHVSVNVVLDSRYDFL
GDPDVVPIGLPQFDDEGDDMDDVLYDAVLGAVESIPRAKRKDLSMLQEAVRRAVRSTANQ
TWGKKPIVTVFVTKV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagaagaagaattggtgttcttgccgctcggcggcgtcggcgaaatcggcatg
aacctcggcctttatggttacggcagtccgggcagccggcaatggatcatggtcgattgc
ggtgtgacctttcccggtccggaactgcccggcgtggaactcgtcctgccggatatctcc
tttctcgccgaggagcggcgcaacctcaaggcgatcatcatcacgcacgcccacgaggat
cattacggcgcgctgaacgacctctggcccgggctcaacgttccggtctatgcctcgccg
ttcacggccggcatgctcgaggcgaaacgcgacttcgagaaaagccgcggcgaaatcccg
atcaccatcttcaaggcgggcgaccgcatcaatgtcggacccttcagcatcgaggctgtc
ggtgtcaaccattccattcccgagccgatgtcgctggtaatccgcacgccgctcggcacc
gtcgtgcataccggcgactggaagatcgacctggaaccctcgctcggcccgatcaccaac
gaagcgcgttttcgccaggtgggcgaagagggcgtgctggcgctcgtctgcgattctacc
aatgcgctgcgcgacggcgtttcgccttccgagcgggaagtctcggaaagtctggcgaag
attatcgctgacgccgaggggcgcgtcggtatcacgaccttctcgtcgaatgtcggccgc
atccgctcggtcgccgaagccgcggaagcggcaggccgcgaagtgctcctgctcggcagt
tcgatgaagcgggtggttgcggttgcaagggacctcggcatcatggaagggctgaagccg
ttcctggcggaggacgaattcggctatatcccgcgcgacaaggtggtcgtcatcctgacg
gggagtcagggagagccgcgcgccgcactcgccaagatcgcccgggatgaaatgcgcaat
gtggcgttctcggccggcgacacgatcgtcttctcgtcgcgcaccatccccggcaacgaa
aaggccatcaacgatatcaagaacggcctgatcgaacagggtatccacatcatcaccgac
agcgaggcgctggtgcacgtgtccggccatccgcgccgcaacgagttgcagcagatgtat
caatggctgaaacctgagatcgtcgtgccggtgcatggcgaggcggcgcatctgacggcg
catgccgagcttgcgctgcattcgggcatcgcgagcgtgccgcggctgcgcaacggcgag
atcctgcgcctcgcgcccggacctgccggcgtggttgatgaggcgcggcacggccgcatc
tacaaggacgggacgctgatcggcgatttcgacgagatgggcatcggcgaacgccgtaag
ctctcctttgccggccacgtctccgtcaatgtcgtgctcgacagccgctacgacttcctc
ggtgacccggatgtcgtgccgatcgggcttccgcagttcgacgacgaaggcgacgacatg
gacgacgttctctacgacgccgtgctcggcgcggtggaaagcatcccacgcgccaagcgc
aaggatctgtcgatgctgcaggaggcggtccgccgcgccgtgcgcagcaccgcaaaccag
acctggggcaagaagccgatcgtcacggtctttgtcacgaaagtctga
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