Sinorhizobium fredii NGR234: NGR_c14030
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Entry
NGR_c14030 CDS
T00888
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rhi
Sinorhizobium fredii NGR234
Pathway
rhi03410
Base excision repair
rhi03430
Mismatch repair
rhi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NGR_c14030 (recJ)
03430 Mismatch repair
NGR_c14030 (recJ)
03440 Homologous recombination
NGR_c14030 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhi03400
]
NGR_c14030 (recJ)
DNA repair and recombination proteins [BR:
rhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NGR_c14030 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NGR_c14030 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NGR_c14030 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
CDC45
Toprim
Motif
Other DBs
NCBI-ProteinID:
ACP25182
UniProt:
C3MCA3
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All DBs
Position
1448711..1450513
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AA seq
600 aa
AA seq
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MNLLADPIERAFLGVERSISGQRWVSRLDQAGQNRALAISQVHGYSELIARVLAGRGVGL
DDAAQFLDPTLRALMPDPDVLTDCRKAAERLAHAIRHGEKVAIFGDYDVDGAASSALMLR
FLRHFDIRAEIYIPDRIFEGYGPNPQAIEQLIENGAGLIVSVDCGSTSHESLAVAAERGV
DVVVIDHHQVGATLPPCHALVNPNREDDLSGQGHLCAAGVVYLVLVNTLRVLRLAGVPRA
ASFDLLALLDLVALATVCDVVPLKGLNRAYVVKGLIAARHMGNNGLAALLRKAAIGGPVT
PYHLGFLIGPRINAGGRIGDAALGSRLLTLDDATAAEVIASQLDELNRERQAMEAAMLAE
AEAEVLAEYGTGEGATVIITARENWHPGIVGLIAARIKEKFRRPAFAIAFDPNGRGTGSG
RSIPGFDMGRLVRAAVDDGLLVKGGGHAMAAGLTVERAKLGRLRQFFEERAESAVRDLVA
VETLKLDGALAAAGATLDLVDLLDQAGPYGSAHPQPVFAFPQHRLRDSRQVGANHIKVTL
EGHDGSRVDGIAFRATETPLGDFLLGSRGSTVHVAGSVSADLWQGTRRVQLRVTDAAKAG
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgaacctattggcggatccgatagagcgggcatttctcggcgtcgaacgctcgatcagc
ggtcagcgttgggtctcgcgcttggaccaggccgggcagaatcgggccttggcgatcagc
caggtgcatggctattcggagctcatcgcacgggtgctggcaggccgcggtgtcgggctg
gacgacgcggctcaatttctcgacccgacgctgcgcgcgctgatgcccgatccggacgtt
ctgaccgattgccgcaaggcggcggagcggctcgcccacgccattcggcacggcgagaaa
gtcgcgatcttcggcgactacgacgtcgacggcgcagcgtcctctgcactgatgctgcgc
ttcctgcgtcatttcgacatccgggccgagatctatattcccgaccgcatcttcgagggc
tacgggcccaatccgcaggcgatcgaacagctgatcgagaacggtgccggactgatcgtc
tccgtcgactgcggttcgaccagccatgaatcgctcgccgtcgctgccgaacgtggcgta
gacgtggtcgtcatcgatcatcaccaggtgggggcgacgcttccgccctgccatgctctt
gtcaatcccaatcgcgaggatgacttgtcgggccaggggcatctctgcgctgccggtgtc
gtctatctggtgctcgtcaacacgttgcgggtgctgcgcctggcgggcgtgccgcgcgcc
gcctcattcgatctgctggcgctgctcgacctggtcgcgctggcaacggtctgcgacgtc
gtcccgctgaaggggctgaaccgtgcctatgtggtcaaggggctgatcgccgcacggcat
atggggaacaatgggttggcggcgcttcttcgcaaggcggcgatcggcggcccggtcacg
ccctatcatctcggcttcctgatcgggccgcgcatcaatgcgggtggccggatcggcgat
gccgcgctcggtagtcggctgttgaccctcgacgacgccacggcagccgaggtgatcgcc
agccagctcgatgagctcaatcgcgagcggcaggcgatggaggcggcgatgcttgccgag
gccgaggcggaagtgctggcggaatacggcacgggcgagggtgccaccgtcataatcacc
gccagggaaaactggcaccccggcatcgtcggtctcattgcggcacgcatcaaggagaaa
ttccgccggccggccttcgccatcgccttcgatccgaacggccggggtacgggttccggt
cgatcgatccccggcttcgatatgggtcggctcgttcgcgccgccgtcgatgacggcctt
ctcgtcaaggggggcggccacgccatggccgccggcctgactgtcgagcgagccaagctc
gggcgattgcgccagttcttcgaggagcgcgccgagagcgcagtgcgcgacctcgtcgcc
gttgagacgctcaagctcgacggcgcgctggccgcggccggggcgacgctcgacctcgtc
gaccttcttgaccaggccggtccctatggctcggcccatccgcagccggtcttcgccttt
ccccagcatcggctgcgcgacagccgccaggtcggcgccaaccatatcaaggtgacgctc
gagggccacgacggcagtagggtcgacggcatcgccttccgggcgacggaaacgccgctc
ggcgatttcctgctcggcagtcgcggctcgacggtccatgtcgccggatcggtttcggcg
gatctctggcagggtacgcgccgggttcaactgcgtgtgacggacgcggcgaaggccggc
tga
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