Sinorhizobium fredii NGR234: NGR_c14690
Help
Entry
NGR_c14690 CDS
T00888
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhi
Sinorhizobium fredii NGR234
Pathway
rhi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NGR_c14690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhi03400
]
NGR_c14690
Enzymes [BR:
rhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NGR_c14690
DNA repair and recombination proteins [BR:
rhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NGR_c14690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
MFD_D3
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACP25241
UniProt:
C3MCG2
LinkDB
All DBs
Position
1512973..1516485
Genome browser
AA seq
1170 aa
AA seq
DB search
MIPGLDSKKIFASAREVTIGPVPSGAEALILADLARAGAPVAYFLSDGQRIADLEQVLGF
VAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRHKPHPAIVLVTVNAALQK
ISPQDVIESLAFSARPGNQVRMDDLAAQLERNGFERVPTVREVGEFAVRGGILDVYVPGS
GEPLRLDFFGDTLETIRSFDPASQRTTGQVRSLDLNPMSEVSLTPETISHFRKQYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYDRLETIFDYLEGFRIVTDHLAREAAAERSKL
ILDYYEARHASASPSKSQISQGTPYKPVPPELLYLSAQGFSAGLTERHAVRLSPFSEHEG
EARQVMTVEARQGVRWAKTAGETEEGDGARANVFDQAVKHIAERRAKGAKVVISGWTEGS
LDRLLQVLAEHGLANIRPVKALADLRSLKPGEAASAVLSLESGFETGDLVVIGEQDILGD
RMVRRSKRRKRGADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYAE
DAKLFLPVENIELLSRYGSEGTDAILDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERH
TRHAPALVAQDGVYDEFAARFPYEETEDQLNSIEAVRDDLGGGRPMDRLVCGDVGFGKTE
VALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTK
KEVADGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSA
TPIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVC
PRLSDLSEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLD
VPTANTLVVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSL
DTLGAGFQLASHDLDIRGAGNLLGGEQSGHIKEVGFELYQQMLEEAVAELKGEEEIHDTG
WSPQISVGTPVMIPEHYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPIEVQH
LLKIVYIKALCRTANVEKLDAGPKGVVVQFRNREFPNPAALVGHIAKQGTLAKIRPDQSI
FFQRELATPDKRLSGAAMVMTQLATLAKAA
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgatccctggtcttgattcgaagaagatttttgcttccgcccgggaagtgacgatcggc
cccgtcccctccggcgccgaagcgctgatcctcgccgatctggcgcgcgccggcgcgccg
gtcgcctattttctgtccgacggccagcggatcgccgatctcgagcaggtgctcggtttc
gtggcgcccgacatcccggtcctgaccttgccgggttgggactgtctgccctatgaccgc
gtttcaccgagtgccgatacatcggcgcgaaggcttgcggcgctcagcgccttgatcgcg
caccgccacaagccgcacccggcgatcgtactggtaaccgtcaatgcggccctgcagaag
atctcgcctcaggacgtgattgagagccttgccttctcggcgcggccgggcaatcaggtt
cgcatggacgatcttgccgcacagctggagcgaaacgggttcgagcgggtgccgaccgtg
cgggaggtcggcgagtttgcggtgcgcggcggcatcctcgatgtctatgtgccgggcagc
ggcgagccgctcaggctggatttcttcggcgatacgctggagacgatccgctccttcgat
ccggcgagccagcgcacgaccgggcaggtgcgctcgctcgatctcaacccgatgagcgaa
gtgtcgctgacgccggagacgatcagtcatttccgcaagcagtatctttcgctcttcggc
gcggcgacgcgcgacgacgcgctctatcaggcggtctccgagggccgtcgctacgccggc
atggagcattggctgccgctcttctacgatcgactggaaacgatcttcgattatctcgaa
ggcttccgcatcgtcaccgatcatctggcgcgcgaagcggcggcggagcgctcgaagctc
attctcgactattatgaggcgcgccatgcctccgcgtctcctagcaagtcgcagatatcc
cagggcacgccctacaagccggtgccgccggaactgctttatctgagtgcgcagggtttc
agcgccggcctgaccgagcgccatgccgtccgtctgtcgccgttctccgaacatgagggc
gaagcgcgccaggtgatgaccgtagaggctcggcagggggtgcgctgggcaaagaccgcg
ggggagaccgaggaaggtgacggcgctcgcgccaatgtcttcgaccaggccgtgaagcac
atcgccgagagacgggcgaagggcgccaaggtcgtcatttccggctggacggagggttcg
ctcgaccgcctgctccaggtgctcgccgagcacggcctcgccaatatccgcccggtgaag
gctctcgccgatctgcgctcgctgaagccgggcgaggcggcgtccgcggtcttgagcctc
gaatccggcttcgagaccggcgacctcgtggtcatcggcgagcaggacatcctcggcgat
cggatggtgcgccgttcgaagcgccgtaagcgcggcgccgatttcattgccgaggtgacc
gggctcgacgagggcagctacgtcgtgcatgccgagcacggcatcggccgcttcgtcggc
ctgcgcacgatcgaggccgccggcgcgccgcatgactgcctggaactcgtctatgccgag
gatgcgaagctgttcctgccggtggaaaacatcgagcttctgtcgcgctacgggtccgag
ggcaccgatgcgatcctcgacaagctcggcggcgtcgcctggcaggcgcgcaaggcgaag
ctcaagaaacggctgctcgacatggcgggcggcctcattcgcatcgctgccgagcgtcat
acccggcacgcgccggccctggtcgcgcaggacggcgtctatgacgagttcgccgcgcgt
ttcccctatgaggagaccgaggatcagttgaactcgatcgaggcggtccgcgacgatctc
ggtggcggcaggccgatggatcgcctcgtttgcggcgacgtcggtttcggcaagaccgag
gtggcgttgcgtgccgccttcatagcggcgatgaacggcgtccaggttgccgtcgtcgtg
ccgacgaccttgttggcgcggcagcatttcaagacgttttcggatcgtttccgcgggctg
ccgatccgcatccagcaagcctcccgcctcgtgggctcgaaggatctggcgctgacgaag
aaggaagtggcggacggcaagacggacatcgtcgtcggcacccatgcgcttctcggttcc
tcgatcaagttcgccaatctcggcctgctgatcatcgacgaggagcagcatttcggcgtc
aagcacaaggagcgcctgaaggaactgaagaccgacgtccatgttctgacgctctcggcg
acgcccattccgcgcaccctgcagctggcgctcaccggcgttcgcgaattgtcgctgatc
accacgccgccggtcgaccgcatggcggtgcgcaccttcatctcgcctttcgacgcattg
gtgatccgagagacgctgatgcgcgagcattatcgcggcggccagagcttctatgtctgc
ccgcgactgagcgatctttccgagatccacgatttcctgaaatccgacgtgccggagctt
aaggttgccgtagcgcatggccagatgccggcaaccgaactcgaagacatcatgaatgcc
ttctacgaaggccgctacgacgtgcttctgtcgacgacgatcgtcgagtcggggctcgac
gtgccgaccgccaacaccttggtcgtgcatcgcgccgacatgttcggcctcgcccagctc
tatcagcttcgcggccgggtcggacgctccaaggtgcgcgccttcgcgctcttcacgctg
ccggtcaacaagacgctgaccggcccggcggagcgacgcctcaaggtgctgcagtcgctt
gacacgcttggcgccggcttccagctcgccagccacgacctcgacatccgcggcgccggc
aacctgctcggcggggagcaatccggccacatcaaggaggtcggcttcgaactttaccag
cagatgctggaagaagcggtagccgagctgaagggcgaagaggaaatccacgataccggc
tggtcgccgcagatatcggtcggcacgccggtgatgattccggaacactatgtgcccgac
ctcaatctgcggctcggcctctatcgtcgcctcggcgaactgaccgatctcaaggagatc
gacggcttcggcgccgaactgatcgaccgcttcgggccgcttccgatcgaggtgcagcat
ctgttgaagatcgtctatatcaaggcgctgtgccgcacggccaatgtcgagaagctcgat
gctggaccgaagggggtcgtcgtccagttccgcaacagagagtttccgaaccctgccgcc
cttgtcggccatatcgccaagcaggggacgctcgccaagataaggccggaccagagcatc
ttcttccagcgcgaactcgccacgccggacaagcgtctctccggcgcggccatggtgatg
acccagcttgcaacgctcgccaaggcggcgtga
DBGET
integrated database retrieval system
