Sinorhizobium fredii NGR234: NGR_c16080
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Entry
NGR_c16080 CDS
T00888
Name
(GenBank) penicillin binding protein
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
rhi
Sinorhizobium fredii NGR234
Pathway
rhi00550
Peptidoglycan biosynthesis
rhi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rhi00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
NGR_c16080
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rhi01002
]
NGR_c16080
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rhi01011
]
NGR_c16080
Enzymes [BR:
rhi01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
NGR_c16080
Peptidases and inhibitors [BR:
rhi01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
NGR_c16080
Peptidoglycan biosynthesis and degradation proteins [BR:
rhi01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
NGR_c16080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Peptidase_S13
Motif
Other DBs
NCBI-ProteinID:
ACP25374
UniProt:
C3MD55
LinkDB
All DBs
Position
complement(1658880..1660034)
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AA seq
384 aa
AA seq
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MRMKWFAIVGILAAIVQGEAAAQTPAFDTKAKQIYLIDAETGTVLFARGEDEPVPPASLA
KLMAMEVVFEALEKGELTQEAVFPVSEHAWRTGGAPSGTSTMFAAIKSQVRVADLIQGAT
VQLANDACIILAEGMAGSEAAFAQRMNARARDLGMPVATFKNATGLPDPGNRVTMRELVT
LSRHLREAHANFYRLYAQPEFEWNKILQRNKNPLIAANVGVDGLATGFAEGFGFSLAASM
QRGDRRVYLAMGGLETDKERTEESRRVLDWAMTNFEKRRIFANGETIGEASIYGGAASHV
ALVAGGPVDVLLPVNNPERLTARIVYKWPLTAPVAAGQLVGVVKLWNGDKLLREVPVKTA
EAVGSGTLSSRALDALQELLFFWL
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatgaagtggttcgcgatcgtgggcatcctggcggcgatcgttcagggcgaggcg
gcggcgcaaacgccagccttcgatacgaaggcgaagcaaatctatctcatcgatgcggaa
accgggaccgtgctcttcgcgcgcggcgaagacgagcccgtgccgccggcctcgcttgcc
aagctgatggcgatggaggtggtcttcgaggcgctggagaaaggtgagctgacgcaggag
gcggttttcccggtttccgaacatgcctggcgaacgggcggggcgccctcggggacgtcc
acgatgttcgccgcgatcaagtcgcaggttcgcgtggccgacctcattcagggcgcaacc
gtccagttggcaaacgacgcctgcatcatcctcgccgaaggcatggccggcagcgaggcg
gccttcgcgcaacgcatgaacgcacgcgcgcgcgaccttggcatgccggttgcgaccttc
aagaacgcgacggggctcccggacccgggaaacagggtcaccatgcgtgaactcgtcacg
ttgtcgcggcatctgcgcgaggcgcatgcgaatttctatcgcctctacgcacagccggag
ttcgagtggaacaagatcctgcagcgcaacaagaacccgctgattgccgccaatgtcggc
gttgacggattggcgacggggtttgccgagggctttggcttctcgctggccgcctcgatg
cagcgcggcgaccgccgggtctatctggcgatgggcggcctcgaaaccgacaaggagagg
acggaggaaagccgccgcgtgctcgactgggcaatgacgaacttcgagaagaggcgaatc
ttcgccaacggcgaaacgatcggcgaagcgagcatctatggcggcgcggcgtcgcatgtc
gcgctcgtcgcgggcggccccgtcgatgtgttgcttccggtcaacaatccggaacggctg
acggccaggatcgtctataaatggccgctgacggcgccagtggcggccggtcagctagtg
ggcgtcgtcaagctctggaacggcgacaagcttttgagggaagttccggtcaagacggcc
gaggcagtcggctccgggacgctcagcagccgcgccctcgatgccctgcaggaacttctg
ttcttctggctgtga
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