Sinorhizobium fredii NGR234: NGR_c26960
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Entry
NGR_c26960 CDS
T00888
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rhi
Sinorhizobium fredii NGR234
Pathway
rhi00300
Lysine biosynthesis
rhi00470
D-Amino acid metabolism
rhi01100
Metabolic pathways
rhi01110
Biosynthesis of secondary metabolites
rhi01120
Microbial metabolism in diverse environments
rhi01230
Biosynthesis of amino acids
Module
rhi_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rhi00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
NGR_c26960
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
NGR_c26960
Enzymes [BR:
rhi01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
NGR_c26960
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
DUF6003
Motif
Other DBs
NCBI-ProteinID:
ACP26445
UniProt:
C3MHU3
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All DBs
Position
2808642..2809910
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AA seq
422 aa
AA seq
DB search
MNHFDYRDGILYAEDVPVTDIARAVGTPFYCYSTATLERHYRVFAQAFADVDAMVCYAMK
ANSNQAVLKTLGRLGAGIDVVSEGELRRALAAGIPAERIMFSGVGKTPREMDLGLEAGIY
CFNVESEPELEILNQRAVRAGKQAHVSFRINPDVDARTHAKISTGKKENKFGISWERARA
VYAHAATLPGIKVTGIDMHIGSQITELQPFDDAFKLLRELVDTLRSDGHAIDHVDIGGGL
GIPYREDNNPPPLPDAYADIVKNQLKGLDCKIVTEPGRLIVGNAGILVTEVIYVKDGGEK
TFVIVDGAMNDLIRPTLYEAYHEIRPVKISAANAPRIKADVVGPVCETGDYLALDREMAM
PKPGDLFAIGSAGAYGAVQAGTYNSRLLVPEVLVKGDRFHVIRPRKDYDALIDLDSVPDW
LD
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
gtgaaccatttcgactatcgcgacggaatcctctacgccgaagacgtgcccgttacggat
atcgcccgcgccgtcggcacgccgttctactgctattccactgccacgctcgagcgccac
tatcgggtcttcgcgcaagccttcgccgatgtcgatgcgatggtctgttacgcgatgaag
gccaattccaatcaggccgtcctgaagaccctcggccggctcggcgccggcatcgacgtg
gtctccgaaggtgagttgcgtcgcgctcttgccgccggcattcctgccgagcggatcatg
ttttccggcgtcggcaagaccccgcgtgaaatggatctggggctggaagccggcatctat
tgcttcaacgtcgagtccgagccggagctggaaatcctcaaccagcgggccgtgcgcgcc
ggcaagcaggcgcatgtttccttccgcatcaatccggacgtcgacgcccgcacccatgcg
aagatctcgaccggcaagaaggaaaacaagtttggtatttcctgggagcgggcgcgggcc
gtctatgcccatgcggcgacgctcccgggtatcaaggtgaccggcatcgacatgcatatc
ggcagccagatcaccgagctgcagcccttcgatgacgccttcaagctgttgcgcgaactg
gtcgatacgctgcgctccgatggccacgccatcgaccatgtcgatatcggcggcggcctc
ggcattccctatcgggaagacaacaatccgccgccgctccccgatgcctatgccgatatc
gtcaagaaccagctcaagggcctcgactgcaagatcgtcaccgaaccggggcgtctgatc
gtcggcaacgccggcattctcgtcaccgaagtgatctatgtgaaggatggcggcgaaaag
accttcgtcatcgtcgacggggcgatgaacgacctgatccggccgaccctctacgaggcc
tatcacgagatcaggccggtgaagatttccgccgccaacgcgccgcgcatcaaggccgac
gtggtgggtcctgtctgcgagacgggcgactatctggcgctcgaccgggaaatggcaatg
cccaagccgggcgaccttttcgcgatcggctcggcaggcgcttacggcgcggtccaagcc
ggcacctataacagccgacttttggtgcccgaggttcttgtcaagggcgatcgtttccac
gtgatccgcccgcgcaaggactacgatgccctgatcgacctcgactcggtgccggactgg
cttgactga
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