Sinorhizobium fredii NGR234: NGR_c30410
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Entry
NGR_c30410 CDS
T00888
Name
(GenBank) putative DNA topoisomerase I protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rhi
Sinorhizobium fredii NGR234
Brite
KEGG Orthology (KO) [BR:
rhi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhi03032
]
NGR_c30410
03400 DNA repair and recombination proteins [BR:
rhi03400
]
NGR_c30410
Enzymes [BR:
rhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NGR_c30410
DNA replication proteins [BR:
rhi03032
]
Prokaryotic type
DNA Topoisomerases
NGR_c30410
DNA repair and recombination proteins [BR:
rhi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NGR_c30410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
ACP26778
UniProt:
C3M967
LinkDB
All DBs
Position
complement(3192008..3193183)
Genome browser
AA seq
391 aa
AA seq
DB search
MPLQIASNPVRRAARMPDRPGAGRSRNGRDRAVGEVPPKESGLVYVSDSEPGIRRQRSGK
GFAYRLPDGSILTDPAVKARIASLGLPPAYENVWICLDENGHLQATGYDTRGRKQYRYHS
EWQALRSGDKFAQLLLFGKALPRIRRMIRRHMEGGTDDARTVLAALVALLDEVHLRTGSP
AYAQANSTYGATTLLKRHLRLLDGCIELRFTAKGGKRVQRRLRRPKLQRLLEDIADLPGR
QLFVWRDDNDMLRPVDSGRLNRYLAEVAGFPVSAKTFRTWAGSVAAFAAAREAMEKGERP
TVKRMCEAAAAVLCNTPAICRKSYIHPEIIGLADTACPATAKQLRRRGRAKPELRVEEAR
LLTFLARAVRSEPKAAAAINGMTAGLAPAVI
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgcccctgcaaatcgcttccaaccccgtccgccgcgcggcgaggatgcctgatcggccc
ggcgccgggcgcagccgtaacgggcgcgatcgggccgtgggcgaggttccgccgaaggaa
agcgggctcgtctatgtcagcgattcggagcctggcatccgacgccagcgctccggcaag
ggattcgcctaccggctgccggacggttccatcctgaccgacccggccgtcaaggcccgt
atcgcatcgcttggcctgccgcccgcctacgagaatgtgtggatctgcctggacgagaac
ggtcatctgcaggcgaccggctatgacacacgcggtcgaaagcaatatcgctatcactcg
gaatggcaggcgctgcggagcggcgacaagttcgcccagcttcttctgttcggcaaggcg
ctgccgaggatccggcgcatgattcgccgtcacatggaaggcgggaccgacgatgcacgc
acagttcttgccgcgctggtcgccttgctcgacgaagtgcatctcaggacgggaagtccc
gcctatgcccaggcgaattcgacctatggtgcgacgacgctgttgaagcgccatttgcgg
ctgctcgatggctgcatagaattgcggttcaccgccaagggaggcaaacgggtccagaga
cggctgcggcgcccgaagctgcagcgcttgctcgaggatatcgccgacctgccggggcgg
cagctcttcgtgtggcgggacgacaacgatatgctgcgcccggtcgattcgggtcgtctc
aaccgctacctggcggaggtcgccggcttcccggtttcggccaagacattccggacctgg
gcggggagcgttgccgccttcgcagccgctcgggaagcgatggagaagggcgagcgcccg
accgtcaagaggatgtgcgaggcggccgccgcagtcctctgcaacacgccggcaatctgc
cgcaagagctacatccatccggaaatcatcggtctcgcggatacggcctgcccggcgacc
gccaagcagttgcgtcgacgtgggcgtgcaaagcccgaacttcgtgtggaagaggcgcgc
ctgctgacttttcttgcgcgcgcggtacgatcggagccgaaggcggcagccgccatcaat
ggtatgacggcgggactggcccccgccgtcatctga
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