KEGG   Sinorhizobium fredii NGR234: NGR_c32280
Entry
NGR_c32280        CDS       T00888                                 
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
  KO
K01778  diaminopimelate epimerase [EC:5.1.1.7]
Organism
rhi  Sinorhizobium fredii NGR234
Pathway
rhi00300  Lysine biosynthesis
rhi00470  D-Amino acid metabolism
rhi01100  Metabolic pathways
rhi01110  Biosynthesis of secondary metabolites
rhi01120  Microbial metabolism in diverse environments
rhi01230  Biosynthesis of amino acids
Module
rhi_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:rhi00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    NGR_c32280 (dapF)
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    NGR_c32280 (dapF)
Enzymes [BR:rhi01000]
 5. Isomerases
  5.1  Racemases and epimerases
   5.1.1  Acting on amino acids and derivatives
    5.1.1.7  diaminopimelate epimerase
     NGR_c32280 (dapF)
SSDB
Motif
Pfam: DAP_epimerase
Other DBs
NCBI-ProteinID: ACP26961
UniProt: C3MAG8
LinkDB
Position
3386328..3387248
AA seq 306 aa
MDNRDMADHVQFARMNGLGNKILVVDMRGRKDRVTPGAAIALNADPATEFDQIMAIHDPR
APGTDAWIDIVNSDGSMAQACGNGTRCVVQALAAETGKKAFLFHTVAGLLEAREHDDGLI
SVDMGSPRFGWNEIPLAEEFHDTRRIELQIGPIDDPVLHSPSVASMGNPHAIFWVENDVW
SYELDRFGPLLENHPIFPERANISIAHVRSRQEMDLRTWERGAGLTLACGSAACAAAVSG
ARTGRTDRIVTVNVPGGPLKIEWRESDDHVIMTGPAEWEWTGTVDPATGAFERDAAATSE
SGARAL
NT seq 921 nt   +upstreamnt  +downstreamnt
ttggacaatcgcgacatggccgaccacgtgcaatttgccaggatgaacgggcttggaaac
aagatcctggtcgtcgacatgcgcggccgcaaggatcgtgtcacgcccggggccgcgatc
gccctcaacgccgatccggcaaccgagttcgaccagatcatggcgatccacgacccgagg
gcccccggcaccgatgcctggatcgacatcgtcaattccgacggttcgatggcccaggcc
tgcggcaacggcacccgctgcgtcgtccaggcgctcgccgccgagaccggcaagaaggcc
ttcctcttccatacggtcgccggcctgctcgaagccagggagcacgacgacggcttgatt
tcggtcgacatgggaagcccacgcttcggctggaacgaaatcccgctcgccgaggaattt
cacgatacgcgccgcatcgagctgcagatcggcccgatcgacgacccggtgctgcattcg
ccttcggtcgcctcgatgggcaacccgcatgcgatcttctgggtcgagaacgacgtgtgg
agctatgagctcgaccgtttcggaccgctcctcgaaaaccacccgatcttccccgagcgc
gccaatatctcgatcgcccatgtccgctcccgccaggagatggatctgaggacttgggag
cgcggcgccgggctgacgctggcctgcggctccgccgcctgtgctgccgccgtcagcggc
gcccggaccgggcgaaccgatcggatcgtgacggtgaacgtgccgggcgggccgctgaag
atcgagtggcgcgaaagcgacgaccacgtcatcatgaccggaccggccgaatgggaatgg
acgggcaccgtcgatcccgccaccggcgccttcgagcgcgatgccgcggcgaccagcgaa
agcggagcgcgggcgctttga

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