Sinorhizobium fredii NGR234: NGR_c32280
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Entry
NGR_c32280 CDS
T00888
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
rhi
Sinorhizobium fredii NGR234
Pathway
rhi00300
Lysine biosynthesis
rhi00470
D-Amino acid metabolism
rhi01100
Metabolic pathways
rhi01110
Biosynthesis of secondary metabolites
rhi01120
Microbial metabolism in diverse environments
rhi01230
Biosynthesis of amino acids
Module
rhi_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rhi00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
NGR_c32280 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
NGR_c32280 (dapF)
Enzymes [BR:
rhi01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
NGR_c32280 (dapF)
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GFIT
Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
ACP26961
UniProt:
C3MAG8
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All DBs
Position
3386328..3387248
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AA seq
306 aa
AA seq
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MDNRDMADHVQFARMNGLGNKILVVDMRGRKDRVTPGAAIALNADPATEFDQIMAIHDPR
APGTDAWIDIVNSDGSMAQACGNGTRCVVQALAAETGKKAFLFHTVAGLLEAREHDDGLI
SVDMGSPRFGWNEIPLAEEFHDTRRIELQIGPIDDPVLHSPSVASMGNPHAIFWVENDVW
SYELDRFGPLLENHPIFPERANISIAHVRSRQEMDLRTWERGAGLTLACGSAACAAAVSG
ARTGRTDRIVTVNVPGGPLKIEWRESDDHVIMTGPAEWEWTGTVDPATGAFERDAAATSE
SGARAL
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
ttggacaatcgcgacatggccgaccacgtgcaatttgccaggatgaacgggcttggaaac
aagatcctggtcgtcgacatgcgcggccgcaaggatcgtgtcacgcccggggccgcgatc
gccctcaacgccgatccggcaaccgagttcgaccagatcatggcgatccacgacccgagg
gcccccggcaccgatgcctggatcgacatcgtcaattccgacggttcgatggcccaggcc
tgcggcaacggcacccgctgcgtcgtccaggcgctcgccgccgagaccggcaagaaggcc
ttcctcttccatacggtcgccggcctgctcgaagccagggagcacgacgacggcttgatt
tcggtcgacatgggaagcccacgcttcggctggaacgaaatcccgctcgccgaggaattt
cacgatacgcgccgcatcgagctgcagatcggcccgatcgacgacccggtgctgcattcg
ccttcggtcgcctcgatgggcaacccgcatgcgatcttctgggtcgagaacgacgtgtgg
agctatgagctcgaccgtttcggaccgctcctcgaaaaccacccgatcttccccgagcgc
gccaatatctcgatcgcccatgtccgctcccgccaggagatggatctgaggacttgggag
cgcggcgccgggctgacgctggcctgcggctccgccgcctgtgctgccgccgtcagcggc
gcccggaccgggcgaaccgatcggatcgtgacggtgaacgtgccgggcgggccgctgaag
atcgagtggcgcgaaagcgacgaccacgtcatcatgaccggaccggccgaatgggaatgg
acgggcaccgtcgatcccgccaccggcgccttcgagcgcgatgccgcggcgaccagcgaa
agcggagcgcgggcgctttga
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