Sinorhizobium fredii NGR234: NGR_c35950
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Entry
NGR_c35950 CDS
T00888
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rhi
Sinorhizobium fredii NGR234
Brite
KEGG Orthology (KO) [BR:
rhi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhi03016
]
NGR_c35950
Enzymes [BR:
rhi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NGR_c35950
Transfer RNA biogenesis [BR:
rhi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NGR_c35950
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ACP27316
UniProt:
C3MC91
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All DBs
Position
3813644..3814270
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AA seq
208 aa
AA seq
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MANTIRFHEGDISAADAARYAGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAG
QKEAPNLVRMLADPARQKIFHFGRFDIAVLFHTFGVTSTPVFCTKIASRLTRTYTDRHGL
KDNLKELLDVDISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLIRDGRMEH
ADACFAFLPTRAKLDLLGWEETDIFAHS
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatacaatacggttccacgaaggtgacatttccgcggccgacgcggcccgctat
gccggcgcgatcgccatcgatacggaaacgctcggcctcgttccccgccgcgaccgtctc
tgcgtcgtgcagctctcgccgggcgacggcaccgccgacgtgatccgcatcgccgccggc
cagaaagaggcgccgaacctcgtccggatgcttgccgatccggcccgccagaagattttt
catttcggtcgcttcgacatcgcggtgctgttccacacctttggcgtgacctctacgccg
gtgttctgcaccaagatcgcctcgcggctgacccgcacctatacggaccggcacgggctc
aaggacaatctcaaggaactgctcgacgtcgacatttcgaagcagcagcagtcctccgac
tgggcggccgatatcctctcgccggcgcagctcgaatacgccgcctcggacgtgctgcac
ctgcatgcgctgcgcgacaagctgacggcgcgcctcatccgcgacggccgcatggagcac
gccgacgcctgcttcgccttcctgccgacgcgcgccaagctcgacctgctcggctgggag
gagacggatattttcgcgcatagctga
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