Rhizobium sp. AB2/73: I8E17_05105
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Entry
I8E17_05105 CDS
T10377
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rhib Rhizobium sp. AB2/73
Pathway
rhib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I8E17_05105 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhib03019
]
I8E17_05105 (rnr)
03016 Transfer RNA biogenesis [BR:
rhib03016
]
I8E17_05105 (rnr)
Enzymes [BR:
rhib01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
I8E17_05105 (rnr)
Messenger RNA biogenesis [BR:
rhib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I8E17_05105 (rnr)
Transfer RNA biogenesis [BR:
rhib03016
]
Prokaryotic type
tRNA degradation factors
I8E17_05105 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
WHD_RNase_R
RNase_II_C_S1
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
UEQ81899
LinkDB
All DBs
Position
complement(1023214..1025592)
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AA seq
792 aa
AA seq
DB search
MSREPRGKISSSERRPGKSGRAIKRGESAEPMMAIMHGVLPPREVILRFIADHPQQASKR
ELAKAFGLKGESRVALKDLLRELEEEGMVQKSRKSLIRPGALPPIAVLDITTRDKDGMLI
GRPAEWAEENGVAPAVMIKQSSSPAGRNGKGKAPVAGMGDRILAKIFPAADRGGPAYTAR
IIKVIDKRQGASIGVFRETAGGGGRLMPIERRGEEMVIDPDYTGGAKDGDLVEVEVARLG
RFGLQRAKVLSVIGSVASEKAISMIAIHAHGIPHVFPAPVIAEADAAKPATMSHREDWRS
LPLITIDPADAKDHDDAVYAEMDPSPDNPDGVIVTVAIADVSWYVRPNSPLDREALKRGN
SVYFPDRVVPMLPERISNDLCSLKEGVDRPALAVRMIFSKEGRKAGHTFHRIMMKSAAKL
SYQQAQAAIDGKPDDKTGPMLEPILKPLWHAYNILKKGRDRRQPLELDMPERKILLKPDG
TVDRVFVPPRLDAHKLIEEMMIQANVAAAETLEKRKQVLIYRIHDGPTLAKQEVLREFLA
TLGISLAKGGNVRANSFNGILAKAEGTAHQTMVNEMVLRSQSQAIYSPDNIGHFGLNLMK
YAHFTSPIRRYADLIVHRALVGSLGLGEGAITPDEEASLDDIAAEISTFERRAMAAERET
VDRLIAHHLAGQVGAEFEARVGGVTKSGLFVTLPEYGADGFIPISTLGTDYFIYDEAHQA
LTGERTGLGYRLGDDVTVRLAEAVPLAGALRFEMLSEGKPMPTAVRSFHKATRRNKSQAR
KAPGTRPPRGRR
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagagaaccgcgcggcaagatttcatcgtcggagcgacgccccggcaagtctggt
cgcgcgatcaagcggggcgagagtgcagagccgatgatggccatcatgcacggcgttctg
ccgccgcgcgaggtgatcctgcgctttatcgctgatcatccgcagcaggcgtccaagcgc
gagcttgccaaagcctttggtctgaagggtgagagccgcgtcgcgctgaaggaccttttg
cgcgagctcgaagaagaaggcatggtgcagaagagccgcaagtcgctcatccgccccggc
gcgctgccgccgatcgccgtgctcgatatcaccacccgcgacaaggatggcatgctgatc
ggccgcccggccgaatgggctgaggaaaacggcgtcgcgcccgccgtcatgatcaagcaa
tcctcctcgccagccggccgcaacggcaagggcaaggcgcctgtcgccggcatgggcgac
cgcattctcgcaaaaatcttcccagccgcggatcgcggcggcccggcctacaccgcccgc
atcatcaaggtcatcgacaagcgacagggcgcctccatcggcgtcttccgcgagacagcc
ggtggcggcggacggctgatgccgatcgaacggcgtggcgaggagatggtgatcgatccg
gattataccggcggtgccaaggacggcgatctggtcgaagttgaagtggcgcgcctcggc
cgcttcggtctgcagcgcgccaaggttctgtcggtcatcggctccgtcgcctccgaaaag
gcgatctcaatgatcgccattcacgcgcacggtatcccgcacgtgtttccggctcccgtg
attgcggaggccgatgccgccaagccggccaccatgtcccatcgcgaggattggcgcagc
ctgccgttgatcaccatagatccggccgacgccaaggatcatgacgatgccgtctatgcg
gaaatggatccctcgcccgacaatcctgacggcgtgatcgtgaccgtcgccatcgccgac
gtttcctggtatgtgcggccgaactcgccccttgaccgcgaggcgctgaagcggggcaat
tcggtctatttccccgatcgcgtcgtgccgatgctgcccgaacgcatctccaatgatctt
tgctcgttgaaggaaggcgtcgaccgccctgccctcgcggttcgaatgatcttctccaag
gaaggccgcaaggccggccataccttccatcgcatcatgatgaagagcgcggccaagctt
tcctatcagcaggcgcaggcggcgatcgatggcaagcccgacgacaagaccggtccgatg
ctggaaccgatcctgaagccgctctggcacgcctacaacattcttaaaaagggccgtgac
cggcgccagccgctcgagctcgacatgcccgagcgcaagatcctgttgaagccggacggc
accgttgatcgcgtcttcgtgccgccgcgcctcgatgcgcacaagctcatcgaagagatg
atgattcaggcgaacgttgccgctgccgagacgctggaaaagcggaagcaggtactgatc
tatcgtatccacgatggcccgacgctcgccaagcaggaggtgttgcgcgaattcctcgcc
accctcggcatatcgcttgccaagggcggcaacgtgcgcgccaacagtttcaacggcatc
ttggcgaaagccgagggtacggcgcatcaaaccatggtcaacgagatggtgctgcgctcg
cagagccaggcgatctacagccccgacaatatcgggcatttcggcctgaacctgatgaaa
tacgcccacttcacctcgccgatccgccgctatgccgacttgatcgtgcatcgcgcgctc
gtcggctcgctcggcctcggcgaaggtgcgattacgccggacgaagaggcctcgctcgac
gatatcgcggccgaaatctcgaccttcgagcgccgtgccatggccgcagagcgtgagacg
gtcgatcggctgatcgcccatcacctcgccggtcaggtcggcgcggaatttgaggcccgg
gtcggcggcgtcactaagtcgggactttttgtcacccttccagagtatggcgccgacggt
ttcatccctatatctacgctcggcaccgattacttcatttatgacgaggcgcatcaggcg
ctgacgggtgaaaggacggggctcggctatcgtctcggcgacgatgtgacggtgagactg
gcggaagccgtgccgcttgcgggagccctgcgcttcgaaatgctgagcgagggcaagcct
atgccgacggcggtgcgctccttccacaaggcgacccgccgcaacaagagccaggctcgc
aaggcgccaggcacgagaccgccgcgcggccgtagataa
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