Rhizobium sp. AB2/73: I8E17_05110
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Entry
I8E17_05110 CDS
T10377
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rhib Rhizobium sp. AB2/73
Brite
KEGG Orthology (KO) [BR:
rhib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhib03032
]
I8E17_05110 (topA)
03400 DNA repair and recombination proteins [BR:
rhib03400
]
I8E17_05110 (topA)
Enzymes [BR:
rhib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
I8E17_05110 (topA)
DNA replication proteins [BR:
rhib03032
]
Prokaryotic type
DNA Topoisomerases
I8E17_05110 (topA)
DNA repair and recombination proteins [BR:
rhib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
I8E17_05110 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Peptidase_M35
Motif
Other DBs
NCBI-ProteinID:
UEQ82853
LinkDB
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Position
complement(1025589..1028261)
Genome browser
AA seq
890 aa
AA seq
DB search
MNVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDGASQK
RIKDIADALKTSDGLILATDPDREGEAISWHVLDVLNKKRVINGKPVKRVVFNAITKKAV
LDAMAEPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR
ESEIERFISEEYWNLSAILKTPRGDEFEARLVSADGKRLQPRAIGNGEEAGRLKALLEGA
SYVVDTVEAKPVKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVDIGGETVGL
ITYMRTDGVQMAPEAIDAARRAIANQFGDRYLPEKARFYSTKAKNAQEAHEAIRPTDFDR
VPDRIRKFLDDDQLKLYDLIWKRGIASQMASAEIERTTVEILADNAGKKAGLRAVGSVVR
FDGFIAAYTDQKEDGEQSDDSEEGGRLPEINARENLAKQKINSTQHFTEPPPRYSEASLI
KKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLVPQAKGRLVTAFLESFFTKYVEYDFT
ADLEEKLDRISAGELNWKDVLRDFWRDFFAQIEDTKELRVTNVLDALNDALAPLVFPKRE
DGSDPRICQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQLSSEGGAEAESNGLNEPKAL
GADPVTGEELTLRSGRFGPYIQRGDGKDAKRASLPRGWKPEDIDYEKAMALISLPRDIGK
HPETGKMISSGIGRYGPFLLHDGSYANLESVEDVFTVGLNRAVTLIAEKQSKAAGGKARG
GTPAALKELGEHPDGGGAITVRDGKYGPYVNWGKVNATLPKGTDPQAITVEEALALIAAK
AGKSGGTTKKAPAKAKTAAAGAKATKTTAKPKAAAKKPAAKTAAKKKSAE
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgaacgttgtagtggtggaatcgcctgccaaggccaagacaatcaataaatatctggga
cccggatataaggttcttgcatccttcggccatgtgcgcgacctgcccgccaaagatggt
tcggtgctgccggaccaggatttcgaaatgctgtgggaagtcgatggtgcctcgcaaaag
cgcatcaaggacatcgccgacgcgctgaaaacctccgacggcctgattctcgcgaccgac
ccggatcgcgagggcgaagccatttcgtggcacgtgctagacgtgctgaacaagaagcgc
gtgatcaacggcaagccggtgaagcgcgtcgtcttcaatgccatcaccaagaaggccgtt
ctcgacgcgatggccgaaccgcgcgacatcgacgtgccgctggtcgatgcctatctcgcc
cgccgcgccctcgactatctcgtcggtttcaacctgtcgccggttctctggcgcaagctg
cccggcgcccgttcggccggccgcgtgcagtccgtcgctcttcgcctcgtctgcgatcgc
gagtcggagatcgaacgcttcatctcggaagaatactggaacctttcggcgatcctgaag
acgccgcgcggcgacgagttcgaagcgcgtctggtctccgccgacggcaagcgcctgcag
ccgcgcgcgatcggcaacggggaagaggccggcaggctgaaggccctgctcgaaggcgcc
tcctatgtcgtcgacacggtcgaggcaaagccggtcaagcgcaatccgagcccgccattc
accacttctacgctgcagcaggcagcctcctcgaagcttggcttctcggcctcgcgcacc
atgcaggtggcgcaaaagctttatgaaggcgtcgatatcggcggcgagaccgtcggcctt
atcacctatatgcgtaccgacggcgtgcagatggcgccggaagcgatcgatgccgcacgc
cgcgccatcgccaatcagttcggcgaccgttacctgccggaaaaggcacgtttctattcc
accaaggccaagaatgcccaggaagcgcacgaagcgatccgcccgaccgatttcgaccgc
gtgccggatcgcatccgcaaattcctcgatgacgaccagctgaagctctatgacctgatc
tggaagcgcggcatcgccagccagatggcatcggccgaaatcgagcgcacgacggtcgag
atcctcgctgacaatgccggcaagaaggctggcctgcgcgctgtcggctccgtcgtccgc
ttcgatggcttcatcgccgcctataccgatcagaaggaagatggcgagcagagcgacgac
agcgaagaaggcggccgcctgcccgagatcaatgcccgtgaaaatctcgccaagcagaag
atcaactcgacgcagcatttcaccgaaccgccgccgcgctattcggaagcctccctgatc
aagaagatggaagagctcggcatcggccgtccctccacctatgcggcaacgctcgcaacg
cttcgtgaccgcgattatgtgaccatcgacaagcgcaagctggtgccgcaggccaagggg
cggctggtgacggccttcctcgaaagcttcttcaccaagtatgtggagtatgatttcacg
gccgatctcgaagagaagctcgaccgcatctccgccggcgagctgaactggaaggacgtg
ttgcgcgacttctggcgcgatttcttcgcccagatcgaggacaccaaagaactacgcgtc
accaatgtcctcgatgcactgaacgatgcgctggcaccgcttgtcttcccgaagcgcgaa
gacggcagcgatccgcgcatctgccaagtgtgcggcacgggcaatctttcgctgaagctc
ggcaaatacggcgccttcgtcggctgctcgaactatccggaatgcaattatacccgccag
ctttcgtcggaaggcggcgcggaagccgaatccaacggattgaacgagccgaaggctctc
ggcgccgatccggtgaccggtgaagagctgacgctgcgttcgggccgcttcggcccctat
atccagcgcggcgacggcaaggatgccaagcgtgcatcgctgccgcgtggctggaagccg
gaagatatcgactatgaaaaggcgatggcgctgatctcgctgccacgcgacatcggcaag
catccggaaaccggtaagatgatctcttccggtatcggccgctacgggcctttcctgctg
catgacggcagctacgccaatctcgaaagcgttgaggacgtcttcaccgtcggtctcaac
cgcgcggtgacgctgattgccgaaaagcagagcaaggcagcgggtggcaaggcacgcggc
ggcacaccggcggcactgaaggaactgggcgagcatccggatggcggcggcgcgatcacc
gttcgcgacggcaagtacggcccctatgtcaactggggcaaagtcaatgcgacgctaccg
aaaggcacggatccgcaggcgatcacggtcgaggaagctctggctctgatcgctgccaag
gcgggcaagagcggcggcaccaccaagaaggcgcccgccaaggcaaagaccgcggcagcc
ggcgcaaaagcgacaaaaacgaccgccaagccgaaggctgctgcaaagaagcctgcggcc
aagacggcagcgaaaaagaagagtgcagagtga
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