Rhizobium sp. AB2/73: I8E17_05265
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Entry
I8E17_05265 CDS
T10377
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhib Rhizobium sp. AB2/73
Pathway
rhib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I8E17_05265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhib03019
]
I8E17_05265
03009 Ribosome biogenesis [BR:
rhib03009
]
I8E17_05265
Enzymes [BR:
rhib01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I8E17_05265
Messenger RNA biogenesis [BR:
rhib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I8E17_05265
Ribosome biogenesis [BR:
rhib03009
]
Prokaryotic type
rRNA processing factors
I8E17_05265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_10
Motif
Other DBs
NCBI-ProteinID:
UEQ81927
LinkDB
All DBs
Position
complement(1056056..1058971)
Genome browser
AA seq
971 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEHRRDDDVEHVETALDLSQQEQPDI
GIVAKEGEEAEVPAAIGEEAPAAEAAAPAEEAAPAKKAKPRRSRKKAVADAPAEETPAPE
ATAAVDAPSEEEEGPSGEMAAMVETDSISEDVATSKRRHDDDDDDDDHDHEEEVIESVGA
EDAMEEVPDRAQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVL
MPNTARGGGISRKITNPQDRKRLKEIAKMLEVPQGMGVILRTAGANRTKVEVKRDFEYLM
RLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKDFMKMLM
PSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRS
TREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKN
DRARIQVGRISHFGLLEMSRQRIRASVLESTTQICSHCGGTGHVRSQSSVALHVLRGIEE
YLLKNTTHDITVRTTPDIALYLLNHKRQTIIDYESRFGVAIVIDADNAVGTQHFAIDRGE
PVANPVKIESLFNFAAIPDDDDDDIVIEADEEEDEELEEKAASTEQQPSARSEGNDGNRK
RKRRRRRRGRGNDTQAAPVSEAGSAASVAEDADGEDGDGDDDEADVGAENTASPGSDDDT
QQKRKRRRRGKRGGRRNRENEGNEQTAAGEEAGSGEADENDAEEGDDASVTVAEIAVAEG
EAAVEAQPAMAAVETAAVVTEDVKPAKGRGRRKAKAVEASPVETPAVEEAPTADVEIEAV
AEIAEVMDNSADTAAPEASEDAAKPARANRESNVSSSAPVVKSTRANEGSESDGEPTKPK
KAGWWQRRGFF
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgcttatcgatgcgtctcacgaggaagagacgcgcgtcgttgtcgtt
cgcgggaaccgcatagaagagtttgacttcgagtcacagcacaagaagcaaattcgcggc
aacatctatcttgcaaaggtaacgcgggtagaaccttcgcttcaggccgccttcgttgat
tacggcggcaaccggcacggctttctggcttttgccgaaatccatcccgactattaccag
attccgctcgccgatcgtcaggcgctgctgaaggccgaggccgaggagcatcgccgcgac
gatgatgtcgagcatgtcgagacggcgctcgatctttcgcagcaggaacagcccgatatc
ggcatcgtggcgaaggaaggcgaagaagccgaggtgccggctgcgatcggcgaagaggcc
cctgccgcagaggcagccgcgcccgccgaagaagcagctccggccaagaaggcaaagccg
cgccgcagccgcaagaaggcagtagcggacgcgcccgccgaagagacgccagctcccgaa
gcaacggctgccgtcgatgcgccgagcgaggaagaggaaggaccgtccggcgaaatggct
gcgatggtcgaaaccgattcgatctcagaagacgtcgcgacctccaagcgccgccacgat
gatgacgatgatgatgacgatcatgaccacgaagaggaagtgatcgaatccgtcggcgcc
gaagacgcgatggaagaagttcccgatcgcgcccagcgcaagccgcgcaagcaataccgc
atccaggaagtcatcaagcgccgccagatcctgctggtgcaggtggccaaggaagaacgc
ggcaacaagggtgcggcgctgaccacctatctctcgctcgcaggccgttattcggttctt
atgccgaacacggcacgcggcggcggtatctcccgcaaaatcaccaatccgcaggaccgc
aagcgcctgaaggaaatcgccaagatgctcgaagtgccacagggcatgggcgtcatcctg
cgtaccgccggtgccaaccgcaccaaggtcgaggtcaagcgcgatttcgaatatctgatg
cgcctttgggaaaacgtccgcacgctgacgctggcttcgaccgcgccgtgcctcgtctac
gaagaaggcagtctgatcaagcgctcgatccgcgacctctacaacaaggatatcggcgag
atcatcgttgccggcgaagaaggctatcgtgaagcgaaagacttcatgaagatgctgatg
ccgagccacgccaaggtggttcaaccctaccgcgacatccatccgatcttctcgcgctcc
ggcatcgaggcgcagctagaccgcatgttgcagccgcaggtgacgctgcgttccggcggc
tacctgattatgaaccagacggaggcgctggtgtcgatcgacgtcaactccggccgttcg
acccgggaacattcgatcgaggacaccgcgcttcaaacgaacctggaagccgccgaggaa
atcgcgcgccagctgcgcctgcgcgaccttgccggcctgatcgtcatcgacttcatcgac
atggaagagaagcgcaacaaccgcgcggtcgagaagaagctgaaggaatgcctgaagaac
gaccgcgcccgcattcaggtcggccgcatctcgcatttcggtcttctggaaatgtcgcgc
cagcgcatccgcgcctcggttctcgaaagcacgacgcagatctgctcgcattgcggcggc
accggtcatgtgcgctcgcagtcttccgttgccctgcatgtcctgcgcggcatcgaggaa
tatctgctcaagaacacgacgcacgacatcaccgtgcgcacgacgccggacattgcgctc
tatctgctcaaccacaagcggcagacgatcatcgattatgaaagccgcttcggcgtcgcg
atcgtcatcgatgccgacaatgccgtcggcacgcagcatttcgcgatcgaccgcggtgag
ccggtcgccaatccggtgaagatcgaaagcctgttcaacttcgcagccatcccggacgac
gatgacgacgatatcgtcatcgaagcggacgaggaggaagacgaagagctggaagaaaag
gctgcgagcaccgagcagcagccatcggctcgctccgaaggcaatgacggcaaccgcaag
cgcaagcgtcgtcgccggcgccgcggccgtggcaacgatacccaagccgctccggtttcc
gaggcaggttcggcggccagtgtcgctgaggatgcggacggcgaagacggtgacggtgac
gacgacgaagctgatgttggtgcggaaaataccgcatcccccggcagtgacgatgacaca
cagcagaagcgcaagcgccgtcgtcgcggcaagcgtggcggacgacgcaatcgtgaaaac
gaaggcaacgaacagactgcagcaggcgaggaagccggttccggcgaagctgatgagaac
gatgcagaagagggcgacgacgcaagcgtaacggtggccgagatcgcggttgccgaaggc
gaagccgccgtcgaggcgcagcccgccatggcagcggtcgaaacggcagccgtcgttacc
gaagacgtcaagcccgccaaaggccgcggtcgccgcaaggcaaaggctgtcgaagcatcg
ccggtcgagacgcccgcagtcgaggaagcgcccacagcggatgtcgaaatcgaggcagtt
gccgagatcgccgaagttatggacaattcggcagacacggcggcgcccgaagcgtctgag
gatgcagccaaaccggcccgcgccaaccgcgaatccaacgtttcctcctctgctccggtg
gtgaaatccacccgcgctaacgaaggtagcgagagcgacggagagccgaccaagccgaag
aaagccggctggtggcaacgccgcggcttcttctaa
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