Rhizobium sp. AB2/73: I8E17_05545
Help
Entry
I8E17_05545 CDS
T10377
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhib Rhizobium sp. AB2/73
Pathway
rhib03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhib00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I8E17_05545 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhib03021
]
I8E17_05545 (rpoC)
03400 DNA repair and recombination proteins [BR:
rhib03400
]
I8E17_05545 (rpoC)
Enzymes [BR:
rhib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I8E17_05545 (rpoC)
Transcription machinery [BR:
rhib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I8E17_05545 (rpoC)
DNA repair and recombination proteins [BR:
rhib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I8E17_05545 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
UEQ81976
LinkDB
All DBs
Position
1104998..1109206
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLTEEEYMLAVDEYGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSELADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDLGELHHALE
NKVVTLHSKIRGRFKSIGEDGKPYSKIYETTPGRLLIGELLPKHAKVTFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPNTKAKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDEKTGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTQIDCGTENGLTMTAIVDAGQVVASLGARILGRT
ALDDIDHPVTGERIVDAGKMILEPDVIEIEKAGIQSIRIRSALTCEIQTGVCSVCYGRDL
ARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
MLRNSEGNLVAMGRNMTVQILDERGVERSSQRVAYGSKLYVDDGDKVKRGQRLAEWDPYT
RPMMTEVAGTVHFEDVVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
NVAKLSRGGEARFLLSVDAILSVEPGQKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSQYIVGDNVDRIELEDANDRLIEEGKKPAYGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATARDELILEERRK
GTGAGVATPMLQDLASENSPAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcgcagaatttcgattcc
atccggatttcgattgcgtcgccggagaagattctttcctggtcttatggcgagatcaag
aagccggaaacgatcaactatcgtacgttcaagccggaacgcgatggtcttttctgcgcg
cgaatcttcggaccgatcaaggactacgaatgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatattgagctggccgctcccgttgcccacatctggttcctgaagtcg
ctgccttcgcgcatttcgacgctgctcgacatgacgctgaaggatgtggagcgcgttctc
tacttcgaaaactacatcgtcactgagccgggtctcaccgcgctcaaggagcatcagctc
ctgacggaagaagagtacatgctcgcggtcgacgaatatggcgaagaccagttcaccgcc
atgatcggcgctgaagcgatctacgagatgctggccagcatgaatctcgaaaagatcgcc
ggcgacctgcgctccgagcttgccgacaccacgtcggatctcaagcagaagaagctgatg
aagcgcctgaagatcgttgagaacttcatggaatccggcaaccgcccggaatggatgatc
atgaaggtcgtcccggtcatcccgccggacctgcgtccgctggttccgctcgatggcggc
cgtttcgcgacctcggatctgaacgatctgtaccgtcgcgtcatcaaccgcaacaaccgt
ctgaagcgtctcatcgaactgcgcgctccgggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatctgtcgatgcgctgttcgataacggtcgtcgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactattccggtcgttcggtcatcgtgaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctatgcccgtctcgacgcgaagggttactcctcgaccgtcaagcaggccaag
aagctggtcgaaaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggttctcctgaaccgcgcaccgacgctgcaccgcctgggcatccaggccttcgaa
cccacgctggtcgaaggcaaggccatccagctgcacccgctcgtctgcacggccttcaac
gccgacttcgatggtgaccagatggccgttcacgtgccgctctcgctggaagcccagctt
gaagcccgcgtgctgatgatgtcgaccaacaacattctgcacccggcaaacggcgcgccg
atcatcgttccctcgcaggacatggttctcggcctgtactatctgtcgatcctgaaccag
aacgagccgggcgaaggcatggccttctccgacctcggcgagctgcatcacgcacttgag
aacaaggtcgtgacgctgcattcgaagatccgcggtcgcttcaagtcgatcggcgaagat
ggcaagccctattcgaagatctatgaaacgacccccggccgtctgctgatcggcgaactt
ctgccgaagcatgcgaaggtcaccttcgacatctgcaaccaggaaatgaccaagaagaac
atctctaagatgatcgacacggtctaccgtcattgcggccagaaggacacggtcattttc
tgcgaccgcatcatgcagctcggctttgcccatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcatcccgaacaccaaggccaagatcgtcggcgataccgaagcgctc
gtgaaggaatacgagcagcagtataacgacggtctgatcacccagggcgaaaagtacaac
aaggttgtcgacgcttggggcaaggccacggaaaaggtcgccgaagaaatgatggcccgc
attaaggccgtcgaattcgacgaaaagaccggtcgtcagaagccgatgaactcgatctac
atgatgagccattcgggtgctcgtggttctccgaaccagatgcgccagctgggcggcatg
cgcggcctcatggccaagccgtcgggcgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctcaccgttaacgagtacttcaactcgacgcacggtgcccgtaagggtctg
gccgacaccgccttgaagaccgcgaactcgggctacctgacccgccgtctggtcgacgtc
gcgcaggattgcatcgtcacgcagatcgattgcggcaccgaaaacggcctcaccatgacc
gccatcgtcgatgccggtcaggtcgttgcctcgctcggcgcccgcatcctcggccgtacg
gccctggacgacatcgatcatccggtcacgggtgagcgcatcgtcgatgccggcaagatg
atcctcgagcccgatgtcatcgagatcgagaaggctggtatccagtccatccgcatccgt
tcggctctgacctgcgaaatccagacgggcgtatgctcggtctgctacggtcgcgacctt
gctcgcggtacgcctgtcaacatcggtgaagctgtcggcgtcatcgccgcacagtcgatc
ggtgagccgggcacgcagctgaccatgcgtaccttccacctgggcggcacggcgaccgtg
gtcgaccagtcgttcctggaagcctcttacgagggcacggttcagatcaagaaccgcaat
atgctgcgcaactccgaaggcaacctcgttgccatgggccgcaacatgacggtgcagatc
ctggacgaacgtggtgtcgaacgctcctcgcagcgcgttgcctacggctcgaagctctat
gtcgacgacggcgacaaggtaaagcgcggtcagcgtctggcagagtgggacccctatacc
cgtccgatgatgacggaagtggccggtacggttcacttcgaagatgtcgtcgacggtctc
tcggtcctcgaagcgacggacgaatccaccggcatcaccaagcgtcaggttatcgactgg
cgctcgacgccgcgcggctcggatctgaagccggcgatcgtcatcaaggacgccagcggc
aatgtcgccaagctttcgcgcggtggcgaagcccgcttcctgctctcggtcgacgcgatc
ctgtccgtcgagccgggtcagaaggtgtctcagggtgacgttctcgcccgttcgccgctg
gaaagcgccaagaccaaggacatcaccggtggtctgccgcgcgttgccgaactgttcgaa
gctcgtcgtccgaaggaccacgccatcatcgcggagatcgatggtacgatccgtctgggc
cgcgactacaagaacaagcgtcgtgtcatcatcgagccggcggaagacggtgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggaaggcgactatatcgaa
aagggtgattacatcctcgacggtaacccggctccgcacgacatcctggcgatcaagggc
gtggaggctttggcttcctacctggtcaacgaaatccaggaagtctaccgcttgcagggc
gttgtcatcaacgacaagcacatcgaagtgattgtccgtcagatgctgcagaaggttgag
atcaccgatgcgggcgacagccagtacatcgtcggcgacaacgtcgatcgtatcgagctg
gaagacgccaacgaccgtctgatcgaagaaggcaagaagcccgcttatggcgatccggtt
ctgctcggtatcaccaaggcatcgctgcagacgccgtccttcatctcggctgcatccttc
caggaaacgacgaaggtgctcaccgaagctgcaatcgccggcaagaccgacggtctgcaa
ggcctgaaggaaaacgtcatcgtcggccgcctgattccggccggtaccggcggtaccatg
acgcagatccgccgcatcgctacggctcgcgacgagctcatcctcgaagagcgccgcaag
ggcacgggcgccggcgttgcaacgccgatgctgcaggatctcgccagcgagaacagcccg
gccgaataa
DBGET
integrated database retrieval system
