KEGG   Rhizobium sp. AB2/73: I8E17_16950
Entry
I8E17_16950       CDS       T10377                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
rhib  Rhizobium sp. AB2/73
Pathway
rhib03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rhib00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    I8E17_16950 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rhib03021]
    I8E17_16950 (rho)
   03019 Messenger RNA biogenesis [BR:rhib03019]
    I8E17_16950 (rho)
Transcription machinery [BR:rhib03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     I8E17_16950 (rho)
Messenger RNA biogenesis [BR:rhib03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     I8E17_16950 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT S1CSD-TOTE-2 DUF6360 AAA ATPase_2
Other DBs
NCBI-ProteinID: UEQ80475
LinkDB
Position
complement(3458964..3460229)
AA seq 421 aa
MAEMKLQELKNKSPTDLLAFAESLEVENASTMRKQELMFAILKVLASQDVEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFRMELDVPTSKDLSPRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPDCYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKNNPDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagcttcaggaactgaaaaataaatccccgaccgatcttctggccttt
gccgaatcgctcgaggtggaaaacgccagcacgatgcgcaaacaggaattgatgtttgcg
atcctgaaggtgctggcgagccaggacgtggaaatcatcggcgagggcgtcgtcgaggtt
ctgcaggatggcttcggtttcttgcgttccgcgaatgcaaactatcttcccggtccggac
gacatctatatttccccctcccagatccgccgcttctccttgaagacgggcgatacggtc
gagggaccgatccgcggaccgaaggaaggcgagcgctatttcgcgctgctgaaagtcaac
accatcaatttcgacgatcccgaaaagatccgtcacaaggttcacttcgacaatctgaca
ccgctctatccgaacgagcggttccgtatggaactcgacgttcccacgtcgaaggatctt
tcgccccgtgtgatcgacctggtggcgccgctcggcaagggccagcgcggtctgatcgtc
gcaccgccgcgtacgggtaagactgttctccttcagaatatcgcccattccattaccgcc
aatcatccggactgctatctgatcgttctgctgattgacgagcgtccggaagaagtgact
gacatgcagcgctccgtgcgcggcgaagtcatctcgtcgaccttcgacgagccggccgtg
cgccacgtccaggttgccgaaatggtcatcgagaaggccaagcgtctggtcgagcacggc
cgtgacgtcgtcatcctgctcgactcgatcacccgccttggccgcgcctataacactgtt
gtcccctcttccggtaaggttctgaccggtggtgtggacgccaacgccctgcagcgtccg
aagcgcttcttcggcgctgcgcgtaatatcgaagaaggcggttcgctgacgattatcgcg
acggcgctgatcgataccggcagccgtatggacgaagtgatcttcgaagaattcaagggt
accggtaactcggaaatcgtgcttgaccgcaaggttgccgataagcgcatcttcccggcg
atggatatcctcaagtccggtacgcgtaaggaagacctgctggtgccgcgccaggatctg
cagaagatcttcgttcttcgccgtatcctcgcaccgatgggcacgaccgacgcgatcgag
ttcctgatcgacaagctcaagcagacaaagaacaacccggatttcttcgattcgatgaat
acgtaa

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