KEGG   Rhizobium sp. C104: MF410_19455
Entry
MF410_19455       CDS       T11756                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
rhic  Rhizobium sp. C104
Pathway
rhic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rhic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MF410_19455 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rhic03021]
    MF410_19455 (rho)
   03019 Messenger RNA biogenesis [BR:rhic03019]
    MF410_19455 (rho)
Transcription machinery [BR:rhic03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     MF410_19455 (rho)
Messenger RNA biogenesis [BR:rhic03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     MF410_19455 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT S1CSD-TOTE-2 DUF6360 AAA
Other DBs
NCBI-ProteinID: ULJ78104
LinkDB
Position
3698552..3699817
AA seq 421 aa
MAEMKLQELKSKSPTDLLAFAESLEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFKMELEIPTSKDLSPRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKNNSDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagcttcaggaacttaaaagcaaatccccgacggatcttttggctttc
gccgaatcgctcgaggtcgagaatgccagcacgatgcgcaagcaggagctgatgtttgcg
atcctcaaaatgcttgccagccaggatgtcgaaattatcggcgaaggggtcgtcgaggtt
ctgcaggatggtttcggttttctgcgttcggccaatgcaaactacctgccgggtccggac
gacatctatatctccccctcgcagattcgccggttctcgctcaaaacaggcgatacggtc
gaaggaccgatccgcggaccaaaagaaggcgagcgctattttgcgctgctgaaagtcaac
accatcaatttcgacgatccggaaaagatccgtcacaaggtacatttcgacaatctgacg
ccgctctatccgaacgagcgcttcaagatggaactcgagattcccacttccaaggatctg
tcgccgcgcgtcatcgacctggtggcgccgctcggcaagggccagcgcggactgatcgtc
gcgccgccccgcaccggtaagaccgtgctgctgcagaatatcgcccattcaatcacggca
aaccatccggaatgctatctcatcgttcttctgattgatgaacgacccgaggaagtgacc
gacatgcagcgctccgttcgcggcgaggtcatctcctcgaccttcgacgaaccggcggtg
cgtcacgtccaggtggcggagatggtcatcgaaaaggcgaagcgccttgtcgagcacggc
cgcgacgtcgtcatcctgctcgattcgatcacccgtctcggccgtgcctacaacacggtc
gttccctcctcaggcaaggttctaaccggtggtgtcgatgccaatgccttgcagcggccg
aagcgtttcttcggtgcggcccgcaacatcgaggaaggcggttctctgacgatcatcgcc
acggcgctgatcgataccggcagccgtatggatgaagtcatcttcgaagagttcaagggt
accggcaactcggaaatcgtcctcgatcgcaaggttgccgacaagcgtatcttcccggcg
atggatatcctgaagtccggcacgcgtaaggaagatctgcttgttccgcggcaggatctg
cagaagatctttgtcctccgtcgcattctggcgccgatgggcacgaccgatgcgatcgaa
ttcctgatcgacaaactgaagcagacgaagaacaattccgacttcttcgattcgatgaat
acataa

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