Rhizobium hidalgonense: FFM81_005380
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Entry
FFM81_005380 CDS
T07043
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rhid
Rhizobium hidalgonense
Pathway
rhid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FFM81_005380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhid03019
]
FFM81_005380
Enzymes [BR:
rhid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FFM81_005380
Messenger RNA biogenesis [BR:
rhid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FFM81_005380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
HEM4
NAT10_TcmA_helicase
AAA_22
AAA_19
Flavi_DEAD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QKK25775
LinkDB
All DBs
Position
complement(1153939..1155630)
Genome browser
AA seq
563 aa
AA seq
DB search
MVRSGASHCGAPKGYALTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIG
LAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIAENLKKFIRKSHL
RVNVVVGGVSINKQQLQLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDL
GFVHDLRKIAKLVPKKRQTMLFSATMPKSIADLAGEYLVDPVTVEVTPPGKAADKVEQYV
HFVGGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQ
RERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEARLLRDIERLMGIDITVASGEAPAHIGAAGPRRANGNGNNRNRGNGQGRG
AEGRGGEGRGGEGRSEHRGNRQERRPRPERTARNEDFRGQRRGEAAPNLGPDNDLVSTSD
FRPSAKPQRPAHNGPNGHHANGEPSGHHRGNGRHAHGRPARKHGEDRGPQQAQGGEPRRD
GNGGNRRGGSGARNGGGQRRERA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgttccggcgctagtcattgtggcgccccgaaaggttatgccttgactaatttt
gaatcgcttggtgtctccaagccgatcgtcgccaccttgttccagctcggcatcgaaacg
ccgacgccgatccaggaacaggccattcccctcctgcttgaaggccgcgacctgatcggc
cttgcgcagaccggcaccggcaagactgccgcctttggcctgccgctcatcgaaaagctg
ctcgccgacgaacgccgtcccgacaaccgcacgacgcggaccctcatcctcgcgccgacc
cgcgagctggtgaaccagatcgccgaaaacctgaagaagtttatccgcaagtcgcatctg
cgcgtcaacgtcgtcgtcggcggcgtctcgatcaacaagcagcagcttcagctcgaaaaa
ggcaccgatgtcctggtcgccacgcccggccgactactcgacctcgtcaaccgtcgtgcg
attacgctgacgacagtgcgttatctcgtgcttgacgaagccgatcagatgctcgacctc
ggcttcgtgcacgatctgcgcaagatcgccaagctggtgccgaaaaagcgccagaccatg
ctgttttcggccaccatgccgaagtcgatcgccgatctcgccggcgagtatctggttgat
cccgttacggtcgaagtcacgccacccggcaaggctgccgacaaggtcgagcagtatgtg
catttcgtcggcggcaagaacgacaagacggaactgctccgcaagtcgctgaccgaaaac
ccggacggccgcgccatcgtcttcctgcgcaccaagcacggtgccgagaagctgatgaag
catctcgagaatatcggctattccgtcgcctccatccacggtaacaagagccagggtcag
cgcgagcgggcgctgaaagcctttcgtgatggcagcatcaagacgctgattgccaccgat
gtcgccgcccgcggcatcgacattccggccgtcagccacgtctacaactacgacctgccc
gaagtgccggacgcctatgtccatcgcatcggccgcacggcgcgcgccggccgcgacggc
atcgcgattgcgttctgcgctcctgacgaagccaggctgctgcgtgacatcgagcgcctg
atgggcatcgacatcacggtcgccagcggcgaagcgccggcacatatcggcgccgccggc
ccgcgccgcgccaacggcaatggcaacaaccgcaatcgcggcaacggccagggtcgcggc
gccgagggtcgcggtggcgaaggccgcggcggcgaaggtcgctccgagcatcgcggcaac
cgccaagagcgccgtccgcggcccgaacgcacggctcgcaatgaggatttccgcggccag
cgccgcggcgaagccgccccgaatctcggccccgacaacgatctggtttcgacctccgac
ttccgcccctcggcgaagcctcagcgtcctgcccataacggccccaatggccaccatgcc
aatggcgagccgagcggccatcaccgcggcaacggccgccatgcccacggccgtccggcc
cgcaagcacggcgaggaccgcggcccgcaacaggcccagggcggcgaaccacgccgcgac
ggcaacggcggcaatcgccgtggcggctccggcgcccgcaatggcggtggccagcgtcgc
gaacgcgcgtga
DBGET
integrated database retrieval system
