Rhizobium hidalgonense: FFM81_007060
Help
Entry
FFM81_007060 CDS
T07043
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhid
Rhizobium hidalgonense
Pathway
rhid03420
Nucleotide excision repair
rhid03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FFM81_007060
03430 Mismatch repair
FFM81_007060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhid03400
]
FFM81_007060
Enzymes [BR:
rhid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FFM81_007060
DNA repair and recombination proteins [BR:
rhid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FFM81_007060
MMR (mismatch excision repair)
Other MMR factors
FFM81_007060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
DUF4420
Motif
Other DBs
NCBI-ProteinID:
QKK23128
LinkDB
All DBs
Position
complement(1497067..1499544)
Genome browser
AA seq
825 aa
AA seq
DB search
MSNSFDDIPFFDEEPGEMARKPQPPAAPAGRPPATGGIAARAMAARDGGSRPDYLAGLNP
EQTEAVETLEGPVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAAREMKE
RIALLVGGAVEGMPWLGTFHSIGVKLLRRHGELVGLRSDFTILDTDDVVRLIKQLIQAEG
LDDKRWPAKQFAGMIDTWKNKGLAPADIPEGDARAFANGRGRDLYFAYQARLTTLNACDF
GDLLMHPIAIFRKNPDLLKEYHGRFRYILVDEYQDTNTAQYMWLRLLAQRAKGEQQNVCC
VGDDDQSIYGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRLG
KTLFTDRSDPDDVRVQVHASWDSEEEARAIGEEIEQLQRGKHLLNDMAILVRASFQMREF
EDRFVTLGLNYRVIGGPRFYERLEIRDAMAYFRLVAQAADDLAFERIINTPKRGLGDTTV
RALHDYARARDIPMLAAAADIIETDELKPKARKALFDVIQSFRRWQELLENTPHTELAEQ
ILEESGYTDMWKNDKSAEAPGRLENLKELIRSMESFESMRGFLEHVSLVMDAETNENLDA
VSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRSLDESGRAGLEEERRLAYVGITRAKHRCH
IWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDKAEPFAN
SYSTPGWKRAQANKTDATRDNWGSRSGHAVERIGYGESGPKGRTIEGELVAKSTSSEPSK
FTLGDRVFHMKFGNGNITGIEGNKLTIEFDRAGQKRVLDGFVERV
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatagtttcgatgatatccccttcttcgacgaagagccgggcgagatggcgcgc
aagccgcagccgcctgccgcgcccgccggaaggccgcctgccaccggtggcattgccgcc
cgcgccatggcggcccgcgacggcggcagccggccggattatctcgccggtctgaacccc
gagcagaccgaagccgtcgaaactttggaaggccctgtcctcgtgcttgccggtgccggc
actggcaagacgcgcgtgctgacgacgcgcattgcccatatcctcaataccggccgtgcc
ttcccatcacagatcctcgccgtcaccttcaccaacaaggccgcccgcgagatgaaggag
cgcatcgcgctactggtcggcggcgccgtcgaaggcatgccttggctcggcacattccac
tcgatcggcgtcaaacttctgcgccgccacggcgagctcgtcggcctgcgttccgatttc
accattctcgataccgacgacgtcgtccgcctgatcaagcagttgatccaggccgaaggc
ctcgacgacaagcgctggccagccaagcagttcgccggcatgatcgacacctggaaaaac
aagggtctcgcgccggccgatatccccgagggcgacgcccgcgccttcgccaatggccgc
ggccgcgacctttatttcgcctatcaggcgcggctgaccacgctgaacgcctgcgatttc
ggcgacctgctgatgcatccgattgcgatcttccgcaagaacccggatctcctgaaggaa
tatcacggccgcttccgctatatcctcgtcgacgagtaccaggacaccaacaccgcccaa
tatatgtggctccggcttctcgcccagcgcgccaagggagagcagcagaatgtctgctgc
gtcggcgacgacgaccagtcgatctatggctggcgcggggccgaagtcgacaacatcctg
cgcttcgaaaaggattttcccggcgccaaggtcatcaagctcgagcgcaactaccgctcg
accgaacatatcctcggggccgccgcccatctgatcgcccataatgaagggcggcttggc
aagacgctgttcaccgaccgttccgatcccgacgacgtcagggtgcaggtccacgcctcg
tgggattcggaggaggaagcccgcgccatcggcgaggaaatcgagcagcttcaacgcggc
aagcatctgctcaacgacatggcgatcctcgtgcgcgcctcctttcagatgcgcgagttc
gaagaccgcttcgtcactctcggcctcaactaccgcgtcatcggcggcccgcgcttctat
gagcgcctcgaaatccgcgatgccatggcctatttccgcctcgtcgcccaagccgccgat
gatctcgccttcgagcgcatcatcaacacgccgaagcgcggcctcggcgacacgacggtg
cgtgcgctgcatgattatgcccgggcccgcgatatcccgatgctggcggcggccgccgac
atcatcgagacggacgagctgaagccgaaggcgcgaaaagccctcttcgacgtgattcaa
tctttccgccgatggcaggaactgcttgaaaacacgccgcataccgaacttgccgagcag
atcctcgaagagtccggctataccgatatgtggaagaacgacaagagcgccgaagcgccc
ggccgcctcgagaacctcaaggaactgatccgctcgatggaaagtttcgagtcgatgcgc
ggctttctcgaacacgtctctcttgtcatggatgccgagaccaacgagaatctcgatgcc
gtctcgatcatgacgctgcattcggcaaagggtcttgagttcgacacggtctttctgccc
ggctgggaggaaggcctcttcccgcaccagcgctcgctcgatgagagcggccgcgccgga
ctggaggaagaacgtcgcctcgcctatgtcggcatcacccgcgccaagcaccgctgccac
atctggttcgtctccaaccgccgcatccatggcctctggcaatcgaccttgccctcgcgc
ttcctcgacgaactgccggaaacccatgtcgaggtcgccgaaatggagcagagctacggc
ggttacggccgtggcggctacggccagtcccgcttcgacaaggcggagccttttgccaat
tcctactccacccccggctggaaacgcgcccaggccaacaagaccgacgccacgcgcgac
aattggggcagccgctccggccacgccgtcgaacgcatcggttatggcgaaagcggcccg
aagggacgcacgattgaaggcgaacttgtagcgaaatccacctcgtcggaaccgtcgaag
ttcaccctcggcgaccgcgtattccacatgaagttcggcaacggcaatatcaccggcata
gaaggcaacaaactgacgatcgagttcgaccgcgccgggcagaagcgggtgctggacggg
ttcgtcgagcgcgtgtga
DBGET
integrated database retrieval system
