Rhizobium hidalgonense: FFM81_010460
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Entry
FFM81_010460 CDS
T07043
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhid
Rhizobium hidalgonense
Pathway
rhid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FFM81_010460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhid03019
]
FFM81_010460
03009 Ribosome biogenesis [BR:
rhid03009
]
FFM81_010460
Enzymes [BR:
rhid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FFM81_010460
Messenger RNA biogenesis [BR:
rhid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FFM81_010460
Ribosome biogenesis [BR:
rhid03009
]
Prokaryotic type
rRNA helicases
FFM81_010460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WHIM1
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QKK23742
LinkDB
All DBs
Position
2190890..2192875
Genome browser
AA seq
661 aa
AA seq
DB search
MTELNGVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAP
TLLQGSERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVISSCVGGMDIRSERRA
LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDSAPDER
RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEAKQHVDIEYRALMVAPSDRENAIINVLR
YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERTHALQAMRDGRARVCIA
TDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL
ENAGISAAWARPPSAEEVSERDDERLLADPIFSEAPQEEEQGLVQQLLSSHGAEKLAAAF
LRLYRTNHSAPEDLIEVTVQDDRGRKRRDNAEPYEPAQKGPREDFGASVWFSVSVGRKQN
AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASADGFQEALGPNKTLERGIRVT
RLSGTPDFSRAPSPKPYAGKSSRDDRPSDTFRDERPKNKFGKGPGGGYAAADNSGQQRQD
SKPWSKKSGKPGFDGPRSDKPKYDKPKFEGGKSEGAKSERPKYEGKGGAGPKGKFSKKKP
G
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgacagaattaaacggcgtcgttccggcgatcgccaaggcgttgcagaagcgcggttac
gccgaactcaccccggtgcagaaggcgatgctcgatccggcgctcgctgcgtccgacgcg
ctggtctcggcccagacgggctccggcaagaccgtcgccttcggtctggcgctggcgccg
acactgctccagggcagcgaacgctttggcaatgccggcgcgccgctcgccctggtcatc
gcgccgacgcgtgaacttgccctccaggtgaaacgcgagctcgaatggctctatgagatg
accggcgcggtgatatcaagctgcgtcggcggcatggacatccgcagcgagcgccgtgcg
ctcgaacgcggcgcccatatcgtcgtcggcacgcccggccgactctgcgaccatatccgc
cgcagggcgctcgacatgtcggaactgaaggccgccgtgctcgacgaagccgacgaaatg
ctcgatctcggtttccgcgaggatctcgaattcattctcgattcggcgccggatgagcgc
cggacgctgatgttttcggcgacggtgccggcggcgatcgccaagcttgccaagagctac
cagcgtgacgccgtgcgcatcagcaccgcggccgaggcaaagcagcatgtcgacatcgaa
tatcgcgcgctgatggtggccccgagcgaccgcgagaacgcgatcatcaacgtgctgcgc
tactacgaagcgaccaacgccatcgtcttctgttcgacgcgcgccgccgtcaatcacctg
accgcgcgcttcaacaaccgcaatttctcggtcgtagcgctttccggcgagttgacgcag
aatgagcgcactcatgcgctgcaggcgatgcgcgacgggcgcgctcgcgtctgcatcgcg
accgatgtcgccgcccgcggtatcgacctgcccggcctcgatcttgttatccatgccgac
ctgccgaccaatccggacacgctgctgcaccgcagcggccgcacgggccgggccgggcgc
aagggtatcagcgccatgatcgtgccgctgaacgcacggcgcaaggctgaacgcctgctg
gagaatgccggcatttcggcagcctgggcgcgaccgccgtcagccgaggaggtcagcgaa
cgcgatgacgagcgattgctcgccgatccgatcttcagcgaagcgccgcaggaggaagag
cagggactggtgcagcagctgctttccagccacggcgccgaaaagctcgccgccgccttc
ctgcgcctttatcgcaccaatcattcggcgccggaggatttgatcgaggtcacggtgcag
gacgatcgcggccgcaagcgccgcgacaatgccgagccctacgagccggcacagaagggg
ccgcgcgaagatttcggcgccagcgtctggttctccgtctcggtcgggcgcaagcagaat
gccgagccgcgctggctgatcccgatgctctgccgcaacggcaatgtgaccaagcgcgag
atcggcgccatcaagatgcagcccgaggaaaccttcgtggagatcgccgcggcaagtgcc
gatggtttccaggaagccctcggaccgaacaagacgctcgaacgcggcatccgcgtgacc
cggctttccggcacgccggacttcagccgggcgccgtcgccgaaaccctatgccggcaag
tcgtcgcgcgacgacaggccgagcgacacattccgcgacgaacgcccgaagaacaagttc
ggcaagggcccgggcggcggatatgctgcagccgacaatagcggccagcaaagacaggat
agcaagccctggagcaagaaatcgggcaagcccggtttcgacggcccgagatccgacaag
cctaaatacgacaagccgaaatttgaaggcgggaagtccgaaggcgctaagtctgaacgc
ccgaaatatgagggcaagggtggcgctgggccgaagggcaagttctcgaagaagaaaccc
ggctga
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