Rhizobium hidalgonense: FFM81_012755
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Entry
FFM81_012755 CDS
T07043
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhid
Rhizobium hidalgonense
Pathway
rhid03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhid00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FFM81_012755 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhid03021
]
FFM81_012755 (rpoC)
03400 DNA repair and recombination proteins [BR:
rhid03400
]
FFM81_012755 (rpoC)
Enzymes [BR:
rhid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FFM81_012755 (rpoC)
Transcription machinery [BR:
rhid03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FFM81_012755 (rpoC)
DNA repair and recombination proteins [BR:
rhid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FFM81_012755 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QKK24151
LinkDB
All DBs
Position
complement(2639555..2643763)
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRAELADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDLGELHHALE
SKVVTLHTKIRGRFKSVDEDGKPYSKIYETTPGRLLIGELLPKNGKVPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDAKAKIVADTESL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDDKTGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTETGLTMTAIVDAGQVVASLGARILGRT
ALDDIDHPVTGERIVDAGKMILEPDVIEIEKAGIQSIRIRSALTCEIQTGVCSVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
ILRNSDGNLVAMGRNMTVQILDERGVERSSQRVAYGSKLHVDEGDKVKRGQRLAEWDPYT
RPMMTEVAGTVQFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
NVAKLSRGGDARFLLSVDAILSVEPGTKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSTYIVGDNVDRIELEDVNDHLIEQGKKPAYGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDELILEERRK
GSGAAVATPMLQDMAEKAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaatttcgattcc
attcggatttcgatcgcgtcgccggagaagatcctctcctggtcctacggtgagatcaag
aagccggaaaccatcaactaccgcacgttcaagccggaacgcgacggtctgttctgcgcg
cgcatcttcgggcccatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgccgctcccgttgcccacatctggttcctgaagtcg
ctgccgtcgcgcatctcgacgctgctcgacatgacgctgaaggatgtcgaacgcgtcctc
tatttcgaaaactacatcgtcaccgagccgggcctgactgccctcaaggagcaccagctc
ctctcggaagaagagtatatgctcgccgttgacgaatacggcgaagaccagttcaccgcg
atgatcggcgctgaggcgatctacgagatgctggcctcgatgaacctcgaaaagatcgct
ggcgacctgcgcgccgagcttgccgacaccacgtcggatctcaagcagaaaaagctgatg
aagcgcctgaagatcgtcgagaacttcatggagtcgggcaaccgtccggaatggatgatc
atgaaggtcgttccggtcatcccgccggacctgcgtccgctggttccgctcgacggcggc
cgtttcgcgacctcggacctgaacgatctctaccgccgcgtcatcaaccgtaacaaccgt
ctgaagcgcctgatcgagcttcgtgcgcctggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatcggttgacgcgctgttcgacaacggccgtcgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctctccgacatgctgaagggcaagcagggacgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcggttatcgtcaccggc
ccggaactgaagctgcaccagtgcggtctgccgaagaagatggcgctcgagctcttcaag
ccgttcatctatgcccgcctcgacgccaagggttattcctcgaccgtcaagcaggccaag
aagctggtcgaaaaggaaaagcccgaagtctgggatatcctcgatgaggttatccgcgag
catccggttctcctgaaccgcgcaccgacgctgcaccgcctgggcatccaggccttcgaa
cccaccctggtcgaaggcaaggcgatccagctgcatccgctcgtctgcacggccttcaac
gccgacttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctc
gaagcccgcgtgctgatgatgtccaccaacaacatcctgcatccggccaacggcgcgccg
atcatcgttccctcgcaggacatggttctcggcctctattacctgtcgatcctgaaccag
aacgagccgggcgaaggcatggccttctccgatctcggcgagctgcatcacgccctcgaa
agcaaggtcgtgacactgcacaccaagatccgcggccgtttcaagtcggtcgacgaggat
ggcaagccctactcgaagatctatgagacgacgcctggccgtctgctcatcggcgaactg
ctgccgaagaacggcaaggttcccttcgacatctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcactgcggccagaaggacacggtcatcttc
tgcgaccgcatcatgcagctcggcttctcccatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcattccggatgccaaggccaagatcgttgccgacaccgaaagcctg
gtgaaggaatacgagcagcagtataatgacggcctgatcacccagggcgaaaagtacaac
aaggttgtcgacgcctggggcaaagccaccgaaaaggtcgccgaagagatgatggcccgc
attaaggcggtcgaattcgacgacaagaccggtcgtcagaagccgatgaactcgatctac
atgatgagccattccggcgcccgcggttctccgaaccagatgcgtcagctgggcggcatg
cgcggcctcatggccaagccgtcgggtgaaatcatcgagaccccgatcatctcgaacttc
aaggaaggcctgaccgtcaacgagtacttcaactcgacgcacggcgcccgcaaggggctg
gcagacaccgccttgaagaccgccaactccggctacctgacccgccgtcttgtcgacgtc
gcgcaggattgcatcgtcacgcacgtcgattgcggcactgaaaccggcctcaccatgacc
gccatcgtcgatgccggtcaggtggttgcctcgctcggcgcccgcatcctcggccgcacg
gcgctcgatgacatcgatcatccggtcacgggtgagcgcatcgtcgatgccggcaagatg
atcctcgagcccgatgtcatcgagatcgagaaggccggtatccagtcgatccgcatccgg
tcggcgctgacctgcgaaatccagacgggcgtctgctcggtctgctacggccgcgacctg
gcccgtggtacgcctgtcaatatgggcgaagccgtcggcgtcatcgcggctcagtcgatc
ggcgagccgggcacccagctcaccatgcgaaccttccaccttggcggtacggccaccgtg
gtcgaccagtcgttcctggaagcctcgtacgaaggtacggtgcagatcaagaaccgcaac
atcctgcgcaactccgatggcaacctcgttgccatgggccgcaacatgaccgtccagatc
ctggacgagcgtggcgtggaacgatcttcgcagcgtgtggcctacggttcgaagctgcat
gtcgacgaaggcgacaaggtcaagcgcggccagcgtctggcggagtgggatccttacacc
cgtccgatgatgaccgaagtggctggtaccgttcagttcgaagacctggtcgacggtctc
tccgttctggaagcaaccgacgaatccaccggcatcaccaagcgtcaggtcatcgactgg
cgttcgaccccgcgcggttcggacctcaagccggcgatcgtcatcaaggatgccagcggc
aatgtcgccaagctttcgcgtggtggtgacgcccgcttcctgctctcagtcgatgcgatc
ctgtcggtcgagccaggcaccaaggtctcccagggtgacgtgcttgcgcgttcgccgctg
gaaagcgccaagaccaaggacatcaccggtggtctgccgcgtgttgccgagctcttcgaa
gcccgccgtccgaaggaccacgccatcatcgcagagatcgatggtacgatccgcctcggc
cgcgactacaagaacaagcgccgcgtcatcatcgagccggcggaagacggtgtcgagcct
gtcgaatacctgatcccgaagggcaagcctttccaccttcaggaaggtgactatatcgaa
aagggtgactacatcctcgacggtaacccggctccgcacgacatcctggcgatcaagggc
gtcgaggctctggcctcctacctcgtcaacgagatccaggaagtctaccgcctgcagggc
gttgtcatcaacgacaagcacatcgaggtgattgtccgtcagatgctgcagaaggtggag
atcaccgatgcaggcgactcgacctatatcgtcggcgacaatgtcgaccggatcgagctc
gaagacgtcaacgatcacctgatcgaacagggcaagaagcccgcctatggcgatccggtt
cttctcggcatcaccaaggcgtcgctgcagaccccgtccttcatctcggccgcatccttc
caggaaacgaccaaggtgctgacggaagctgcgatcgccggcaagaccgacggtctgcag
ggtctgaaggaaaacgtcatcgtcggccgcctcatcccggccggcactggcggcaccatg
acccagatccgccgtatcgctacgtcgcgcgacgagctgatcctcgaagagcgccgtaag
ggctccggtgctgccgttgccacgccgatgctgcaggacatggccgaaaaggctccggct
gcggaataa
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integrated database retrieval system
