Rhizobium hidalgonense: FFM81_012985
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Entry
FFM81_012985 CDS
T07043
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhid
Rhizobium hidalgonense
Pathway
rhid03030
DNA replication
rhid03430
Mismatch repair
rhid03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FFM81_012985 (dnaE)
03430 Mismatch repair
FFM81_012985 (dnaE)
03440 Homologous recombination
FFM81_012985 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhid03032
]
FFM81_012985 (dnaE)
03400 DNA repair and recombination proteins [BR:
rhid03400
]
FFM81_012985 (dnaE)
Enzymes [BR:
rhid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FFM81_012985 (dnaE)
DNA replication proteins [BR:
rhid03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FFM81_012985 (dnaE)
DNA repair and recombination proteins [BR:
rhid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FFM81_012985 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
DUF655
McdB_C
Motif
Other DBs
NCBI-ProteinID:
QKK24191
LinkDB
All DBs
Position
complement(2690984..2694481)
Genome browser
AA seq
1165 aa
AA seq
DB search
MADTAKGSTAEATGGTPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNL
FVALEFSQKAMDEGLQPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATDAGYER
LVDLVSRAYLGGESNQAIHVRASWLAEAGTEGLIALTGALTGPVDAAIKEGHSAQAEARL
LALKSLFGDRLYVELQRHGTYDKRHEQGIVGLAYAHDLPLVATNEAFFPTRDDYDAHDAL
MAVAHNAIVSDDSRFRLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFVLKTRKPI
LPRFTGATDDAEEAERAEASELRRQAVEGLDLRLATLGMSPGYEEKEYRERLDFELSVIE
RMRFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDF
VAKRGIAVDLAAIPLDDKPTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVA
LYRPGPMENIPTYNARKHGEEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKAEMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHF
QTGDNRIYYALAALKGVGESAVDHIVEVRGDKPFAGIEDFCLRIDPRQVNRRVLESLIFA
GAFDCFDMDRAQLAAGLDRVLGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLA
SERLLKEFQVLGFYLTAHPLDSYNNILQKMRVQTFAEFSQAIKQGAFNARLAGTVISKQE
RKTRTGNKMGIIVFSDSSGQFEAVLFSEMLNQYRDVLESGKSFVLTATGEERPEGIGLRI
QTIQSLEEKSLQMQKALRVYVRDSGPLKMVAGHLNAKGDGLVSFIVIKEDGKREVEVALS
EKYRITPEIAAALRAAPGVVDVELV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcggatacggcaaagggttctacggctgaggcgaccggcggcacgccgggcttcatc
catctgagggtccattctgcctattcgcttcttgagggcgctttgccgctgaagaagatc
ctctacaaggcgaccggcgacagccagccggcaatcgccattaccgacaccaacaatctg
ttcgtcgcactggaattttcccagaaggcgatggacgagggcctgcagccaatcatcggt
tgccaggtctcgatcgacatggaagacgggttggaaacggaaaagcgcggcggccagcag
gccctggtcaagctgccgtcgatcgttcttctcgctgccacggatgccggttacgaacgg
ctggtcgatctcgtcagccgcgcttatctcggcggtgaaagcaaccaggccattcatgtc
agagcctcctggctggcggaggccggcaccgaagggctgattgctttgaccggcgccctg
accgggccggtcgacgcggcgatcaaagagggccattccgcccaggcggaagcccggcta
ctcgcgctgaagagcctgttcggcgataggctctatgtcgaactgcagcggcacggcacc
tacgacaagcgccacgagcaggggatcgtcgggctcgcctatgcccacgacctgccgctg
gttgcgaccaatgaggccttcttcccgacccgcgacgattacgacgcccatgatgcgctg
atggcggtcgcccacaacgccatcgtctccgacgacagccgctttcgcttgacgccggac
cattatctgaagagccgggccgagatggccaagcttttcgccgacctgccggaagcgctg
gaaaatacgatcgagatcgccaggcgctgctcctttgtgctgaagacgcgcaagccgatc
cttccccgcttcaccggcgcgaccgacgatgccgaggaagccgaacgcgccgaggcgagc
gaattacgccgccaggcggtcgaagggttggacctgcggcttgcgacgctcggcatgtcg
ccgggttacgaggaaaaggaatatcgcgagcggctggatttcgagctcagtgtcatcgag
cgcatgcgttttcctggttacttcctgatcgttgccgacttcatcaaatgggccaagcag
cacgatattccggtcggtcccggccgcggttccggcgcaggctcgcttgttgcctacgcc
ttgacgattaccgatgtcgatccgctgcggttttcgctgctgttcgagcgcttccttaat
cccgaacgcgtctcgatgccggacttcgacatcgacttctgccaggaccgccgcgaagag
gtgatccgctacgtccaggccaagtatggccgcgagcaggtggcgcagatcatcaccttc
ggttcgctgcaggcgcgcgccgcccttcgcgacgtcggtcgcgtgcttgagatgccctac
ggtcaggtcgacaagatctgcaaactcgtgccgaacaacccggccaacccgacgccgctg
tcgaaggcgatcgaggaggagccgaagctgcaggaggaggcggcaaaggaaccggtcgtc
gcgcgcctgctcgacattgcccagaagatcgaggggctttaccgccatgcctcgacgcac
gccgccggcatcgtaatcggcgaccggccgctctccaagctggtgccgatgtatcgcgat
ccgcgctccgacatgccggttacccagttcaacatgaaatgggtggagcaggccggcctc
gtcaagttcgacttcctcggcctgaagacgctgacggtgctgaaggtcgccgtcgatttc
gtcgccaagcgcggcatcgcggtcgaccttgccgccattcctctcgacgacaaaccaacc
tacgagatgctgtcgcgcggcgaaacggtcggtgtgttccaggtggaaagtgccggcatg
cgcaaggcgctgatcggcatgaagccggactgcatcgaggacatcatcgcgctggtggcg
ctctatcgtccgggcccgatggagaatatcccgacctacaatgcccgcaagcacggcgaa
gaggagctggaatcgatccatccgatgatcgaccacctgctcaaggaaactcaaggggtc
atcgtctatcaggaacaggtgatgcagatcgcccaggtcctgtccggctattcgctcggt
gaagccgaccttctgcgccgcgccatgggcaagaagatcaaggccgagatggaccagcag
cgcgaacgcttcgtcgttggcgccgtcaagaacggcgtctcgaagccgcaggccgacaat
atcttcgaactgctggcgaagttcgccaactacggcttcaacaagtcgcatgccgccgcc
tatgccatcgtctcctaccagacggcctatatgaaggcgcattatccggtcgaattcctc
gccgcctcgatgacgctcgacatgtccaacaccgaaaaggtcaatgacttccgtcaggat
gccaagcgcttgggtatcgaggtgatcgcaccctcggtccagacctccttccgccacttc
cagaccggcgacaaccgcatctattacgcgctcgccgccctcaagggcgtcggcgaatcc
gccgtcgaccatatcgtcgaggtgcgcggcgacaagccgtttgccggtatcgaggatttc
tgcctgcgtatcgatccgcgccaggtcaaccgccgcgtgctcgaaagcctgatctttgcc
ggcgccttcgattgtttcgacatggaccgcgcccagcttgccgccggtctcgaccgcgtt
ctcggttatgcccagcgcgcccaggagaacaagctgagcggccagtcggacattttcggc
agtacgctgacctcggggcccgagaagatctccctgccgccgttttcgccatggctcgcc
tcggagcggctgctcaaggagttccaggtgctgggtttctatctcaccgcccacccgctc
gattcctacaacaacatcctgcagaagatgcgggtgcagacctttgcagagttttcccag
gcgatcaaacagggcgccttcaatgcacgcctcgccggcaccgtcatttcgaagcaggag
cgcaagacccgcaccggcaacaagatgggcatcatcgtcttttccgattcctccggccag
ttcgaggcggtgctgttttcggaaatgctgaaccagtatcgcgacgtgctggaatcggga
aaatccttcgtgctgaccgccaccggcgaggagcggccggaagggatcggcctgcgcatc
cagacgatccagtcactggaggaaaaatcactgcagatgcagaaggcgctgcgcgtctat
gtcagagattccgggccgctgaagatggtcgccggccatctcaacgccaagggcgacggc
ctcgtttccttcatcgtcatcaaggaggacggcaaacgcgaggtggaagtggcgctgtcg
gagaaataccgcatcacgccggaaatcgcggccgctctccgcgccgcccccggcgtcgtt
gatgtcgagcttgtctag
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