Rhizobium hidalgonense: FFM81_018110
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Entry
FFM81_018110 CDS
T07043
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhid
Rhizobium hidalgonense
Pathway
rhid03420
Nucleotide excision repair
rhid03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FFM81_018110
03430 Mismatch repair
FFM81_018110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhid03400
]
FFM81_018110
Enzymes [BR:
rhid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FFM81_018110
DNA repair and recombination proteins [BR:
rhid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FFM81_018110
MMR (mismatch excision repair)
Other MMR factors
FFM81_018110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
RecR_HhH
HHH
Motif
Other DBs
NCBI-ProteinID:
QKK25138
LinkDB
All DBs
Position
3724283..3726343
Genome browser
AA seq
686 aa
AA seq
DB search
MYLEKLNPQQRMAVEHGTLTDGSHIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRI
LLMTFSRRAAAEMARRVERICRDVLGANAGIMADALNWSGTFHGIGARLLRDYAQQIGLD
PEFTIHDREDSADLINLIRHDLGFSKTESRFPAKGTCLAIYSRAVNSETALEQVLRDAFP
WCAAWEKQLRELFACYVESKQAQNVLDYDDLLLYWAQMVGESVIAEDIGSRFDHVLVDEY
QDTNRLQASILMALKPGGQGLTVVGDDAQSIYSFRAATVRNILDFPGAFSPAADIVTLDR
NYRSTQPILAAANAVIDLASERFTKNLWTERQSAERPRLVTVRDEADQARYVADMVLDNR
EEGLTLKQQAVLFRASHHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLATLRFAQNP
RDRVAGFRLMQILPGVGPSTAQKALDLMAEDASPLSALAEMPTPPRSGEDWTAFVSMLQE
LKSGKAGWPAEIELARQWYAPHLERLHEDAATRQADLLQLEQIAGGYASRERFLTELTLD
PPDATSDQAGVPLLDEDYLILSTIHSAKGQEWTRVFMLNVVDGCIPSDLAVGATAEIEEE
RRLLYVAMTRARDGLDLVVPQRFFTYGQNAQGDRHVYASRSRFIPATLLQFFEACSWPQV
KSQSAAQAQARQVRIDVGARMRGMWR
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtatctcgaaaagctcaatccccagcagcgcatggccgtcgaacacggcacgctcact
gacggcagccatattgccgggccgctgctggtcattgccggcgccggctcgggcaagacg
aacacgctggcgcaccgggtcgcccatctgatcgtcaagggcgccgatccccgccgcatt
ctgctgatgaccttctcgcgccgggccgcggccgagatggcgcggcgcgtcgagcgcatc
tgccgcgatgtgttgggtgcgaatgccggcatcatggccgacgcgctcaattggtccggc
accttccacggcatcggcgcgcggctgttgcgcgactacgcccagcagatcggcctcgat
cctgaattcaccatccatgaccgcgaagacagcgccgatctgatcaacctcatccggcac
gatctcggtttctccaaaaccgaaagccggtttccggccaagggcacctgccttgccatc
tatagcagggcggtgaattcggaaaccgcgctcgagcaggtcctgcgcgacgcctttccc
tggtgcgcggcctgggagaaacagctgcgcgagcttttcgcctgttatgtcgagtcaaag
caggcccagaacgtgctcgattacgacgatctgctgctctactgggcgcagatggtcggc
gagagcgtgattgccgaggatatcggcagccgcttcgaccatgtgctggtcgacgaatat
caggacacaaaccggctgcaggcctcgatcctgatggcgctgaagcctggtggccagggg
ctgaccgtcgtcggcgacgatgcccaatcgatctattcgttccgtgcagcgacggtgcgc
aatattctcgattttcccggcgccttcagcccggctgccgatatcgtcacgctcgaccgc
aattaccgctcgacgcagccgatcctggcggcggccaacgccgtcatcgatctcgcttcg
gagcgtttcaccaagaacctgtggaccgagcggcaatcggccgagcggccgcggctcgtc
acggtgcgcgacgaggccgaccaggcgcgttatgtcgccgacatggtgctcgacaatcgc
gaggagggcctgacgctcaagcagcaggccgtgctgttccgcgcctcgcatcacagcggg
ccgctggaggtcgagttgacccggcgcaacattcccttcgtcaagttcggcggcttaaag
tttctcgacagtgcgcatgtcaaggacatgctggctacgctgcgcttcgcgcagaacccg
cgcgaccgggtggcgggtttccggctgatgcagatcctgcccggcgtcgggccgtcgacg
gcgcagaaggcgctcgacctgatggccgaggatgccagcccgctatcggcgctggccgaa
atgccgacgccgccacgctccggcgaggactggactgcattcgtttcgatgctgcaggag
ctgaaatccggcaaggccggctggccggcggaaatcgaactggcgcggcaatggtacgcg
ccgcatctggaacggctgcatgaagacgccgcgacacgccaggccgatctcttacagctc
gagcagattgccggcggttatgcctcgcgcgaacgttttctcaccgagctcaccctcgat
ccgccggatgcgaccagcgaccaggccggcgtgccgctgctcgatgaggactatctgatc
ctgtccaccatccattccgccaagggccaggaatggacaagggtcttcatgctgaatgtc
gtcgatggctgcattccgagcgatctcgccgtcggcgccaccgccgaaatcgaagaggaa
cgccggctgctctatgtggcgatgacacgtgcgcgggacggtctcgatctggtcgtgccg
caacgctttttcacctacgggcagaacgcgcagggcgaccggcacgtttacgcctcgcgc
agccgcttcattccggcgacgctgctgcagttcttcgaagcctgcagctggccgcaggtg
aaatcgcagtccgccgcgcaagcccaggcgcggcaggtgcgtatcgatgtcggcgcccgc
atgcgcggcatgtggcgatag
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