Rhizobium hidalgonense: FFM81_028880
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Entry
FFM81_028880 CDS
T07043
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rhid
Rhizobium hidalgonense
Brite
KEGG Orthology (KO) [BR:
rhid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhid03032
]
FFM81_028880
03400 DNA repair and recombination proteins [BR:
rhid03400
]
FFM81_028880
Enzymes [BR:
rhid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FFM81_028880
DNA replication proteins [BR:
rhid03032
]
Prokaryotic type
DNA Topoisomerases
FFM81_028880
DNA repair and recombination proteins [BR:
rhid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FFM81_028880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF4982
Motif
Other DBs
NCBI-ProteinID:
QKK27356
LinkDB
All DBs
Position
pPR19E02:9709..10716
Genome browser
AA seq
335 aa
AA seq
DB search
MNAEAITELGLVYVSDTEPGIRRRRKGKGFSYVMPDGTTLADELQRARIGALGLPPAYEN
VWICLYENGHLQATGYDARGRKQYRYHKDWQSFRSAGKFHQLIEFGRALPRIRRTVLRHL
DTGTEDIDGVLAALTTLLDEAHLRVGNQAYVRENGTYGATTLLKRHLKIVDGQIELKFRA
KGGKRVQRSLKHPRLQKILEEIADLPGRQLFVWKDDSGTLKPVDSGRLNAYLAEISGIPI
SAKTFRTWAGSLAAFGAAREKIVGGGRPTVKEMSEAAAEALHNTPAISRSSYIHPAIIAL
AGNDHPLIESGTEPLRGLRAEENRLLDFLTREIKE
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccgaagccattaccgaacttggtcttgtttatgtcagcgatacagagccgggc
atccggaggcgaaggaaaggcaagggcttcagctatgtcatgccggacggcacgacgctt
gccgatgaattgcaacgggcgcgcatcggcgcgctcggactgccaccggcctatgaaaat
gtctggatctgcctctatgaaaacggccacctgcaggcgacgggctatgacgcgcgtggg
cgaaagcagtaccgctatcacaaggattggcaatccttccgcagcgccggcaaattccac
cagctgatcgaattcggccgggcattgccgaggatacgccgcaccgtgctgcgccacctc
gacaccggtacggaggatatcgacggcgtgcttgcggcgctgacgactctgctcgacgag
gcgcacttgcgcgttggcaaccaggcctatgtcagggagaacggcacctatggcgcaacg
acgctgctgaagcggcacctgaagattgtcgacgggcagatcgagctgaaattccgcgcc
aagggcggtaaacgcgtccagcgcagtctcaaacatcccaggctgcagaagatcctggag
gaaatcgccgacctgcccggccgtcagctcttcgtctggaaagatgacagcgggacgctg
aaaccggtcgattccggccggttgaacgcctatctggccgagatatcaggtattcccatt
tccgcgaagaccttccgcacctgggccggatcactggcggctttcggagcggcgcgcgaa
aagatcgtcggtggcggccggccgacggtgaaggaaatgtcggaggcggcagccgaagca
ctgcacaacacgccggcaatctcacgctcgagctacatccatccggcgatcatcgcgctt
gccggcaacgatcatccgttgatcgaaagtggcaccgaaccgctgcggggcttgcgggcc
gaggaaaacaggctacttgatttcctcacacgcgagatcaaggaatga
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