Rhinolophus hipposideros (lesser horseshoe bat): 308495832
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Entry
308495832 CDS
T12007
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
rhii Rhinolophus hipposideros (lesser horseshoe bat)
Pathway
rhii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
308495832 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhii03019
]
308495832 (SKIC2)
Enzymes [BR:
rhii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
308495832 (SKIC2)
Messenger RNA biogenesis [BR:
rhii03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
308495832 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
308495832 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
Ski2_N
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
308495832
NCBI-ProteinID:
XP_080900423
LinkDB
All DBs
Position
3:complement(106642122..106653098)
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AA seq
1246 aa
AA seq
DB search
MLETERLVLPPLDPLDLPLRAVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGAAHPARKWQRKMDPWSLLAVLGAPVPSDLQAQRHPTTGQILGYKEVL
LENTDLTATTSLSLRRPPGPISQSLWGNPTQYPFWPGGVDEPTITDLSTREEAEEEIDFE
KELLTIPPGFKKGVDFAPKDHSAPAPGLLSLSRLLEPLDLGGGNEDERDAVGQPGGTRGD
TAPASPCSVPLARTSSLEDLVLKEASTAIFPTELPKPLPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDIQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGTFYTKGYYAAVEAKMERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGVLPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMVDLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKRLEALEEPDMTDQLVDLPEYYRWGEELTESRGLIQRRVMESVNGLKSLS
TGRVVVVQNQEHHNALGVILQVSSNSTSRVFTTLVLCDKHTGEDPQERGSASPDVPYPDD
LVGFKLFLPEGPCDYTVAKLQPGDVAAITTKVLRVNGEKILEDFSKKQQPKFKKDPPIAA
VTTAVQELLRLAQAYPAGPPTLDPVNDLKLKDVSVVEGGLRARKLEELIRGAQCVHSPRF
PAQYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRV
ACAMSSHELLLTELLFDNALSALQPEEIAALLSGLVCQSSGDPGEQLPSTLKQGLERVRA
VAKRIGEVQEACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgctggagacagagcgactcgtactacctcccctagaccccctggacctgccccttcgg
gctgtggagctgggatgcactgggcgctgggagctgctgaatgtgcctggggctccagag
agcacccttccccacggcctccccccctgtgccccagatctgcagcaagaagcagagcag
ttgttcctgtcatctccagcctggctgcctctgcatggtgcggctcacccagcccgaaaa
tggcagaggaagatggatccttggtctctcctggctgtactgggggcccccgttccctct
gacctacaagcccaaagacacccaaccacaggccagatactgggctacaaggaggtcctg
ctggagaatacagacctgacggccacgacctccttgtctcttcgccggccaccggggccc
atttcccagtccctatgggggaatccaacacagtaccctttctggccaggtggagtggac
gagcccaccataacagatctgagcactcgggaagaagctgaggaggagatagactttgag
aaagagcttcttaccattccacctggcttcaagaaaggcgtggactttgcaccaaaggat
cactcagctccagctcctggtttgctcagcttgagccgtctgctggaacccctggatttg
ggtgggggcaatgaggatgagagggacgcagtgggacagccgggaggtaccagaggggac
actgctccagcctctccctgcagtgttcccttggcccgaacaagcagcttggaggaccta
gtgttgaaggaagcgtccacagctatattccccaccgagctccccaaacccctacctcag
gagcagtgggctattcctgtggatgtcacctcccctgttggtgatttctatcgcctcatc
ccccagccagccttccagtgggcatttgagcctgatgtgttccagaaacaggccattctg
cacttggaacggcacgactcagtctttgtggcagctcacacatctgcggggaagacagtt
gtggctgaatatgccattgccctcgcccagaaacacatgacacgcaccatctacacttcg
cccatcaaggctctaagtaaccagaagttccgagacttccgaaacacattcggggatgtg
gggctgctcactggggacatacagctgcacccggaggcctcctgcctcatcatgacgaca
gagatccttcgctccatgctgtacagcggctcagatgtcatccgggacctggagtgggtc
atctttgatgaggttcactacatcaatgacgctgagcgtggggtcgtatgggaggaggtg
ctcattatgctccctgaccacgtctccatcatccttctgagtgccactgtccccaacgcc
cttgaatttgctgactggattggacgactgaagcgccgtcagatttatgtgatcagcact
gtcgctcgccccgtccccctagagcattatctcttcacggggaacagccccaagacgcag
ggtgagctcttcctgctgctggactcccgaggcaccttctacacaaaggggtactatgca
gctgtggaggccaagatggaaaggatgagcaagcacgcacagacctttggggccaagcag
cccacgcatcagggggggcctgcacaggaccgcggtgtgtacctgtccctgctggcctcc
ctccgcacccgtgcacagctgcccgtggtggtgttcaccttctcccggggccgctgtgat
gagcaggcctcaggcctcacctcccttgatctcaccacaagttcagagaagagtgagatt
cacctcttcctgcagcgctgcctcgctcgcctccgcggctctgaccgccagctgccccag
gtgctgcacatgtcggagctcctacaccgaggcctgggcgtgcaccacagtggcgtcctg
cccatcctcaaggagatcgtggagatgctgttcagccgcggcctggtcaaggtcttgttt
gccacagagaccttcgccatgggtgtaaatatgccagcccgaaccgtagtgtttgactcc
atgcggaagcatgatggctctaccttccgggacctgctccctggggagtacgtgcagatg
gcaggccgggcgggccggagaggcctggaccccacaggcactgtcatcctgctctgcaag
ggccgcgtgcccgagatggtggacttgcaccgtatgatgatggggaagccgtcccagctg
cagtctcagttccgcctcacgtacaccatgatcctcaacctgctgcgggtggatgccctc
agagtggaggacatgatgaagaggagcttctctgagtttccatctcgcaaggacagcaag
gcccatgaacaggctctggctgaactgaccaagaggctggaggccttggaggagcccgac
atgactgaccagctggttgacctgcctgagtattacaggtggggagaggaactgacagag
agccggggcctgatccagcgacgcgtcatggagtctgtgaacgggctgaaatctctctcc
actgggagggtggtggttgtgcagaatcaggagcatcacaacgccctcggcgtgatcctg
caggtctcctcgaactccactagcagagtattcacaaccctggtcttgtgtgataaacat
acgggtgaggacccacaggagagggggtcagcctccccagatgtaccctacccggatgac
ctcgtgggattcaagctgttcctgcctgaagggccctgtgactacacggtggccaagctc
cagccaggagatgtggccgccatcaccaccaaagtgctccgggtgaatggggagaagatc
ttggaggacttcagcaagaagcagcaaccgaaattcaaaaaggatccccccattgctgcc
gtgaccactgctgtccaggaactgttgcgtctagctcaggcctacccagcaggaccccct
acccttgaccctgtcaacgatttgaaactcaaggatgtgtcggttgttgagggggggctc
cgggcccggaagctggaggagctgatccggggggctcagtgcgtgcacagcccccgtttc
cctgcccagtacctgaagttgcgggagcgaatgcagatacagaaggagatggagcgtctg
cgcttcctgctgtcggatcagtcgctgctgctgctccctgagtaccaccagcgagtagag
gtgctccgaaccctgggttatgtggatgaggcgggcacggtgaagctggcagggcgggtg
gcttgtgccatgagcagccatgagctgctcctcactgagctcctgttcgacaacgctctg
agtgccctgcagccagaggagatcgcggccctgctctctggcctggtgtgccagagctcc
ggggaccctggggagcagctcccaagcaccctcaaacagggactggaacgtgtccgggct
gtggccaagcggattggtgaggtccaggaggcttgtggcctgaatcagaccgtggaggaa
tttgtaggggagctgaattttgggctggttgaggttgtgtacgagtgggcccggggcatg
cccttctctgagttggcagggctctcagggacccccgagggcctggtggtccgctgcatc
cagcgcctggcagagatgtgtcgctcgctgcggggggcagcccgcctggtgggcgagcct
gtgctaggtgccaagatggagacggcagctaccctgctacggagggacattgtctttgca
gctagtctctacactcagtga
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integrated database retrieval system
