Rhinolophus hipposideros (lesser horseshoe bat): 308499530
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Entry
308499530 CDS
T12007
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3 isoform 1
KO
K12600
superkiller protein 3
Organism
rhii Rhinolophus hipposideros (lesser horseshoe bat)
Pathway
rhii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
308499530 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhii03019
]
308499530 (SKIC3)
Messenger RNA biogenesis [BR:
rhii03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
308499530 (SKIC3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_16
TPR_8
TPR_17
TPR_CcmH_CycH
TPR_14
TPR_11
TPR_12
CFAP70_TPR_C
ANAPC3
CFAP70_mid_TPR
TPR_9
TPR_INTS8_3
TTC22_N
CABIN1_N
ARM_TT21_C
ARM_TT21_2nd
Sel1
TPR_5
Fis1_TPR_C
TPR_15
ARM_TT21_5th
BTAD
TPR_20
TPR_30
TPR_6
Motif
Other DBs
NCBI-GeneID:
308499530
NCBI-ProteinID:
XP_080909220
LinkDB
All DBs
Position
7:37117063..37193331
Genome browser
AA seq
1564 aa
AA seq
DB search
MSNKEVKAALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPDQLLAWQGLASLYEKCKLVNAKDDLPGVYQKLLDLYESVDKQKWCDVCK
KLVDLYYQEKKHVEVARTWHKLIKTKQELGADKHELYQLWKKLTHLLPESNEGQNNETQQ
LLLTAFENALDLSHKIPSEDHQALYRHFIECLSKFPHETARLKKACEGMLSIYSTVQYPL
EVLCLHLIESGSLTDEGHQYCCRLVEMDSKSGPGLVGLGIKALQDKKYEEAVRNLTEGLK
ESPLCTTGWYHLAEAQVKMHRPKEAVLSCNQALKNIDNLHVSGGSLHQKNLCLRLKAEAL
IKLSDYESSEEAICTLDQVSDAHNIPGLLVLKGLAYLNKGSLDEASKIMEGVLSSYPDLA
EAHALEALIHFTKKDYLQAEKCFQRALEKDAEVAEYHYQLGLTYWFMGEETRKDKTKALT
HFLKAARLDTYMGKVFCYLGHYYRDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVE
LEEMETALAILTAVTQKASAGMAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEAIAQYQLIIK
KKEDYVPALKGLGECHLMMAKAALVDYLDGKAVDCIEQALEYFTWALQHQADVSCLWKLV
GDTCTSLYAVAPSKVNVSVLGVLLGQKEGKQVLKKNELLHLGERCYGRALKLMSTSNTWC
DLGINYYRQAQHLAETGSNTNDLKELLEKSLHCLKKAVRLNSNNHLYWNALGVVSCHSGI
ANYALAQHCFIKSIQTEQINAVAWTNLGVLYLANENIEQAHEAFKMAQSLDPSYLMCWIG
QALIAETVGSYDTMDLFRHTTELSMHTEGAIGYAYWVCTTLQDKSNRDTELYQYNILQMN
AIPAAQVVLSKYIERIQNYAPAFIMLGYLNEHLQLKKEAAGAYQRAVLLLQTAEDRDTYN
VAVRNYGRLLCAIGECDKAIQAFKSTSLEELEDIIGFALALFMKGLYKESSKAYERALSI
VESEQDKAHILTAMAITEYKQGKVDIAKTLLFKCSILKEPTTESLQALCALGLAMQDVKL
SKAALNELLKHIKQKDSDYQTCLLTSAIYALQGCSVAVQRQVSKAVHSNPADPALWSLLS
RVVAQYAQQKAKGGAVAGNVAHILDSNHGKKALLYTAVNQLAMGSSSAEDEKNTALKTIQ
KAALLSPGDPAVWAALMAACHADDRIALVNNTQPKRMDVYLALLSAVSASIKDKGFLENY
NVSLEKWSLSQAVTGLVDTGRISEAEALCTKNLKSNPDQPAVILLLRQVQCKPLLESQKP
LPDVVLEELKKTVMSNSASVPAWQWLAYIYQSQGMMGAAEMCYRKSLQVASQQGSWSGKL
SSLLRLALLALEVCMANIPNDHWPSLVQEATAEALKLCFCPLAVLLQALLQFNRKMGARE
TRRLLERVVYQPGYPKSIVSTARWYLLRHLHAKNDYELINVLLSHAKTHGDTRALELNQK
LSPQ
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacaaggaggtgaaggctgctctaaaaagtgctagagatgcaatcagaaacaaa
gaatataaagaagctttgaaacattgtaagacagtgttaaaacaagagaaaaataactac
aatgcctgggtttttattggcgttgctgcagccgagctagaacaacctgatcaggcccag
ggagcctataagaaagctgctgaactagagccagaccaattattagcttggcaggggtta
gcaagcttatatgagaaatgtaaactcgtaaatgctaaggatgacttacctggtgtttac
caaaagctcctggatctttatgaaagtgtcgacaaacagaagtggtgtgatgtctgtaag
aaacttgtggatctgtattaccaagaaaagaaacacgtagaggtggcccgaacatggcat
aaactgataaagacaaagcaggagctgggtgcagacaaacacgagctttatcagctctgg
aagaaattgactcacttgctgcctgagagtaatgagggtcagaataatgagactcagcaa
ctgcttttaactgcttttgagaatgcactggacttatcccataagattcctagtgaagat
caccaagcactttatagacatttcattgaatgtttgtccaaatttccccatgagactgct
aggttgaagaaggcctgcgaaggaatgctaagcatctattccactgtacaatatccatta
gaagtgctttgtttgcatttaattgaatcaggaagtcttactgatgagggacatcagtat
tgttgcagactagtggaaatggattcaaaaagtggcccaggccttgttggtttaggtatt
aaagcattacaagacaaaaagtacgaagaagcagttaggaacttaacagaagggttaaaa
gaaagccctctctgcacaactggatggtatcatctggcagaagcccaagtcaaaatgcat
agacctaaggaagctgttctttcgtgcaatcaagccctgaagaacatcgataatcttcat
gtgtctggtggcagtcttcatcagaagaatctttgtcttcgtttaaaagcagaggctttg
attaaactctcagattatgaatcttcagaggaagcaatctgtactcttgatcaggtttct
gatgcacataatatcccaggacttttggttctcaaaggcttggcttatctgaacaaaggc
tcattagatgaagcttcaaagataatggaaggcgttctctcttcttaccctgacctagct
gaagctcatgcgctggaggctttgattcattttaccaaaaaggactatctacaagcagaa
aaatgttttcagagagctcttgagaaggatgctgaagttgctgaatatcattaccaactt
gggttaacatattggttcatgggtgaagaaacaagaaaagataaaacaaaggctctcacc
cacttcctaaaggctgccagactggatacatatatgggcaaagttttctgctatttaggt
cattattacagagatgtagtaggagataaaaacagagcccgtggatgttacaggaaagct
tttgagttagatgacacggatgctgaatctggagctgctgctgttgacttaagcgtggag
ctggaagagatggaaactgccttagctatcctaacagcagtaactcagaaggcaagtgct
ggaatggcaaaatgggcctggcttaggcgagggctatactacttgaaagctggtcaacat
tctcaagctgtggctgatttacaggcagcattaagggcagacccaaaggacttcaattgt
tgggaatcattaggcgaggcgtacctaagccgaggtggctatacgacggctttgaaatcc
ttcacaaaagccagtgagctgaacccagaatccatatacagcgtgtttaaggttgcagca
atacagcaaatcctaggcaaatataaggaggctatagctcaataccagctaatcattaaa
aagaaagaagattatgtgcctgctttgaaaggtttgggtgaatgccacctcatgatggca
aaagcagctctagtcgattatctcgatggcaaagctgtagactgcatagaacaagcactg
gaatattttacttgggctttgcagcatcaagctgatgtgtcttgcctttggaagctagtt
ggggatacctgtaccagtctgtatgctgtcgcaccatctaaagtgaatgttagtgtttta
ggagtccttctaggtcagaaagaaggaaaacaagtactgaagaaaaatgagctcctccat
cttggagaaaggtgttacgggcgtgcattaaaactgatgtctacgtctaatacatggtgt
gatcttggaattaattattatcgccaagcacaacatctagcagaaacaggcagcaatacg
aatgatcttaaagagttgttggagaaatctttacactgtttgaaaaaggcagtgagactc
aacagtaataaccacttatactggaatgctcttggtgtggtttcatgtcacagtggtatt
gcaaattatgcccttgctcaacactgtttcatcaaatcaatccaaacagagcaaattaat
gctgttgcatggaccaacttgggagtgttataccttgcaaatgaaaacattgagcaagct
catgaagctttcaaaatggctcagtcccttgacccatcttatttaatgtgctggattgga
caagctcttattgcagagacagttggaagttatgacaccatggatctctttaggcacact
acggaactcagtatgcacactgagggagcaataggttatgcgtactgggtctgtacaaca
ctgcaagataagagcaacagagacacagaactctaccagtacaacatcctccagatgaat
gctatcccggcagcgcaggtggttttgagtaaatacatagaaagaattcagaattatgct
ccagctttcataatgttgggttacttaaatgaacatctacaactgaaaaaggaagcagca
ggcgcataccaaagggcagttttgttgttacagactgcagaagaccgagatacttataat
gttgcagtaagaaattatggcagattgttatgtgccattggtgaatgtgataaagctatc
caggcttttaaatcaacatcccttgaagagttagaagacatcataggttttgcattggct
ttatttatgaagggtctgtataaagagagcagcaaagcctatgagagagccttgtctatt
gtggaatcagagcaagacaaagctcatatcttgacagcgatggcaataacggagtataaa
caaggaaaagtggatatagccaagacactgctgtttaaatgctctatcttaaaggaacca
accacagagagccttcaagccctttgtgctctaggattggcaatgcaggatgttaagctg
tcaaaagcagcgcttaacgagttactgaagcacatcaaacagaaagacagtgattatcag
acgtgccttctgacttcagcgatttatgcgttgcaaggctgcagtgtggcagtgcagaga
caagtatctaaagctgttcacagtaacccagctgaccctgctctttggtctctgctgtcc
cgagtggttgctcagtatgctcaacaaaaagcaaagggaggtgctgtagcaggaaatgtg
gctcatattctggactcaaatcatggaaagaaggcattactgtacactgcagtaaatcag
ctggctatgggaagcagttcagcagaagatgaaaaaaatactgcactgaagaccattcag
aaggcagctcttctttctccaggtgatcctgctgtctgggctgcactaatggcggcctgt
catgctgatgacagaatagccctagtgaacaacactcagccaaagaggatggacgtatac
ttggcgctgttatcggctgtttctgcttcaattaaagacaaaggatttcttgaaaattac
aacgtgtctcttgaaaagtggtctctctcccaagctgtcacgggtctagtagacacagga
agaatatctgaagctgaagccctttgcacaaagaatttaaaaagtaatcctgaccagcca
gctgttatcttacttttgagacaagttcagtgtaaaccactcttggaatcccaaaagcct
ctcccagatgttgtacttgaagagctgaaaaaaacagtcatgtccaactcagcctctgtt
ccagcttggcagtggttggcatacatatatcagtcccaaggaatgatgggtgctgcagag
atgtgctacagaaaaagtctacaagtggcttcccaacagggcagttggagtgggaagctc
tcaagtctgttaagactagcactgcttgcgttagaagtctgcatggctaacattcccaat
gatcattggccgtccttggttcaagaagctacagctgaggccttgaaactttgcttttgt
ccactggctgtccttttacaagctttgttacagttcaaccgcaaaatgggggcaagagag
acacggcgacttttggagagagtggtttatcagcctgggtatcccaaatctattgtgtca
actgcacgttggtacctactgagacacttacatgccaaaaatgactatgagctcattaat
gtgctgctgagccatgctaaaactcatggagatacaagagcattggaactgaatcaaaaa
ttatctccacagtaa
DBGET
integrated database retrieval system
