Rhinolophus hipposideros (lesser horseshoe bat): 308502664
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Entry
308502664 CDS
T12007
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform 2
KO
K19719
collagen type II alpha
Organism
rhii Rhinolophus hipposideros (lesser horseshoe bat)
Pathway
rhii04151
PI3K-Akt signaling pathway
rhii04510
Focal adhesion
rhii04512
ECM-receptor interaction
rhii04518
Integrin signaling
rhii04974
Protein digestion and absorption
rhii05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
rhii00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
308502664 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
308502664 (COL2A1)
04518 Integrin signaling
308502664 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
308502664 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
308502664 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
308502664 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rhii00536
]
308502664 (COL2A1)
Glycosaminoglycan binding proteins [BR:
rhii00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
308502664 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
308502664
NCBI-ProteinID:
XP_080916848
LinkDB
All DBs
Position
9:complement(49885501..49916474)
Genome browser
AA seq
1488 aa
AA seq
DB search
MIRFGAPQTLVLLTLLVATVLRCHGQDVQKADSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSTDLATASGQCVKFQGQKGEPGDIKDIVGPK
GPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNF
AAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM
GPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK
GEAGAPGVKGESGAPGENGSPGPMGPRGLPGERGRTGPAGSAGARGNDGQPGPAGPPGPV
GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPTGASGNPGTDGIPGAK
GSAGGPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ
GAPGPAGEEGKRGARGEPGGAGPVGPPGERGAPGNRGFPGQDGLVGPKGAPGERGPSGLA
GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKIGPSGAAGEDGRPGPPGPQGARGQP
GVMGFPGPKGANGEPGKAGEKGLSGAPGLRGLPGKDGETGAAGPPGPTGPAGERGEQGAP
GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGQR
GLPGTPGTDGPKGASGPVGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAP
GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGTAGARGAPGERGETGPPGPAGFAGPP
GADGQPGAKGEQGEAGQKGDAGTPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP
GAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGAPGEKGEP
GDDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPP
GPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGPLGAPGAPGPPGSPGPA
GPTGKQGDRGEAGAQGPMGPAGPAGARGIAGPQGPRGDKGETGEAGERGLKGHRGFTGLQ
GLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA
GPPGNPGPPGPPGPPGPGIDMSAFAGLGGREKGPDPMQYMRADQAAGNLRQHDAEVDATL
KSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMET
GETCVYPNPANVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLR
LLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCT
KHTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcttcggggctccccagacgctggtgctgctgacgctgctcgtcgccactgtc
cttcggtgtcacggccaggatgtccagaaggctgacagctgtgtgcaggacgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
acggtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagaatgctgccccatctgctcaactgacctcgccactgccagtggtcaatgt
gtcaaatttcagggacagaaaggagaacctggagacatcaaggatattgtaggacccaaa
ggaccacctgggcctcaggggcctgcaggtgaacaaggacccagaggtgatcgtggtgac
aaaggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctgggacccctgga
aatcccggcccccctggccctcctggcccccctggtccccctggccttggtggaaatttt
gctgcccagatggccggaggatttgatgagaaggctggtggcgcccagatgggagtcatg
caaggaccaatgggccccatgggacctcgcggacctccaggcccggctggcgctcccgga
cctcaaggatttcaaggcaatcctggtgaaccgggggaacccggcgtctctggtcccatg
ggtccccgtggtcctcctggcccccctggaaaacctggtgatgatggtgaagctggaaag
cctggaaaatctggtgaaagaggccctcctggccctcagggtgctcggggcttcccagga
accccaggccttcctggtgtcaaaggtcacagaggttacccaggcctggatggtgctaaa
ggcgaagctggtgctccaggtgtgaagggcgagagtggtgcccctggtgagaatggttct
ccaggcccaatgggtccccgcggtctgcctggtgagagaggacggactggccctgccggc
tctgcgggtgcccggggcaatgatggtcaaccaggccctgcaggtcctccgggtcccgtg
ggtcctgctggtggtcctggcttccctggggctcccggtgccaagggtgaagctggtccc
accggtgctcgtggtcccgaaggtgctcaaggtcctcgtggtgaacctggcaatcctggg
tcccctgggccgactggtgcctctggtaaccctggaaccgatggaattcctggagccaaa
ggatctgctggtggtcctggcattgctggtgctccaggcttcccagggccccgtggtcct
cctggccctcaaggtgcaactggtcctctgggcccgaaaggtcagacgggtgagcctggt
attgctggcttcaaaggcgaacaaggccccaagggagaacctggccctgcaggcccccaa
ggagcccctggtcctgctggtgaagaaggcaaaagaggtgcccgtggagagcctggtggt
gctggacccgttggtcccccgggagaaagaggtgctcctggcaaccgtggtttcccaggt
caagatggtctggtagggcccaagggagcacctggagagcgagggcccagtggccttgct
ggccccaagggagccaacggggaccctggccgtcccggagagcctggccttcctggagcc
cggggtctcactggccgccctggtgatgctggtcctcaaggcaaaattggcccttctgga
gccgctggtgaagatggtcgccctggacctccaggtcctcagggggctcgtgggcagcct
ggtgtcatgggtttccctggccccaaaggtgccaatggcgagcctgggaaagctggtgag
aaaggactgtctggtgctcctggtctgagaggtcttcctggcaaagatggtgagacaggt
gctgcaggcccccctgggcccactggacctgctggtgaacgaggcgagcagggcgctcct
gggccatctgggttccagggacttcctggccctcctggtcccccaggtgaaggtggaaaa
ccaggtgaccagggtgttcccggtgaagctggagcccccggcctcgtgggtcccagaggt
gaacgaggtttcccaggtgaacgtggctctcctggtgcccagggcctccagggtcaacgt
ggtctccccggcactcctggcactgacggtcccaaaggtgcatctggcccagttggcccc
cctggggctcagggccctccaggtctacaggggatgcccggtgagaggggagcagctggt
attgctgggcccaagggcgacaggggtgatgtcggtgagaaaggccctgagggagccccc
gggaaggacggtggacgaggtctgaccggtcctattggcccccctggcccagctggtgcc
aatggtgagaagggagaagttggccctcctggcccttcgggaacagctggtgctcgtggt
gccccgggtgaacgtggagagactggaccccctggacccgctggatttgccggtcctccc
ggtgctgatggccaaccaggtgccaagggtgagcaaggagaggccggccagaaaggtgac
gctggcactccgggtcctcagggcccctccggagctcctgggcctcagggtcctactggt
gtgactggtcctaaaggagcccgcggtgctcaaggccctccgggagccactggattcccc
ggagctgctggccgtgttggacccccaggctccaatggaaaccctgggcccccgggaccc
cctggtccttccggaaaagatggtcccaaaggtgctcgaggagacagtggcccacctggc
cgagctggtgaccccggcctccaaggtcctgctggagcccctggcgagaagggagagcct
ggagatgatggtccctctggtcccgatggtcctccaggtccccagggtctggctggtcag
aggggcattgttggtcttcctgggcagcgtggtgagagaggattccccggcttgcccggc
ccatcgggtgagcctggcaagcagggagctcctggtgcatctggagaccgaggtccccct
ggccctgtgggtcctcctggtctgactggtcccgctggtgaacccggacgagagggaagc
cctggtgctgatggcccccctggcagagatggtgcagctggagtcaagggtgatcgtggt
gagactgggcccctgggtgctcctggagcccctgggccccctggctctcctggccctgca
ggcccaactggcaagcagggagatcgaggagaagctggtgcacaaggccccatgggaccc
gcaggacctgctggagcccggggaatcgcaggccctcaaggcccccgaggtgacaaagga
gaaactggagaggctggcgagaggggactgaagggtcaccgtggcttcactggtctgcag
ggtcttcctggccctcctggtccttctggagaccaaggtgcttctggtcctgctggtcct
tctggcccaagaggtcctcctggccctgttggtccctcgggcaaagatggtgctaatgga
atccctggccccattggacctcctggtccccgtggacgttctggcgaaacaggccccgct
ggtcctcctggaaatcctggcccccctggccctccagggccccccggccctggcatcgac
atgtcagcctttgctggcctgggtgggagagagaaaggacctgaccccatgcagtacatg
cgggcagaccaggcagctggcaacctgagacagcacgatgccgaagtggatgcgacgctc
aagtccctcaacaaccagattgagagcatccgcagccccgagggctcccgcaagaacccc
gcccgcacctgcagggacttgaaactctgccaccctgaatggaagagcggagactactgg
attgaccctaaccagggctgcaccttagacgccatgaaggttttctgcaacatggagact
ggcgagacttgtgtctaccccaacccagcaaatgttcccaagaagaactggtggagcagc
aagagcaaggacaagaaacatatctggtttggagaaacaatcaacggtggcttccacttc
agctatggtgatgacaacctagctcccaacactgccaacgtccagatgaccttcctgcgc
ctgctgtccaccgagggctcccaaaacatcacctaccactgcaagaacagcattgcctac
ctggacgaagcagctggcaacctcaagaaggccctgctcatccagggctccaatgacgtg
gagatccgggctgagggcaacagcaggttcacgtacactgtcctgaaggatggctgcacg
aaacacaccggtaagtggggcaagactatgatcgagtaccggtcacagaagacctcacgc
ctgcccatcattgacattgcacccatggacataggagggcccgagcaggaatttggtgtg
gacatagggcctgtctgcttcttgtaa
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integrated database retrieval system
