Rhinolophus hipposideros (lesser horseshoe bat): 308503552
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Entry
308503552 CDS
T12007
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform 1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rhii Rhinolophus hipposideros (lesser horseshoe bat)
Pathway
rhii03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rhii00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
308503552 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhii03021
]
308503552 (PCF11)
03019 Messenger RNA biogenesis [BR:
rhii03019
]
308503552 (PCF11)
Transcription machinery [BR:
rhii03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
308503552 (PCF11)
Messenger RNA biogenesis [BR:
rhii03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
308503552 (PCF11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
308503552
NCBI-ProteinID:
XP_080919018
LinkDB
All DBs
Position
10:55304697..55327328
Genome browser
AA seq
1683 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLNQSDTKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSPSPLKNKLSHTKDLKNQDSESTRVSDMSKRDPRLKKHLQDKTDSKEDDIKE
KRKTAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTIPEELEKQGTKPGRSSNRKRSR
SRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKVGKIRQSGVKQSHMEEFAPPSRDE
RNAKRSTKQDVRDPRRIKKSEEERPQETANQHSTKSGTEPKENVENWPSSKSSKRWKPGW
EENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTHANKR
ELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKPLL
SDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASRNS
GAQFDRKEQFSERARRLSPISGSRTYAENLAPHEGRRRHDEQVSAKGVREEQRSPFNDRF
PLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVPRDGPTKMIFE
GPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP
LRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQSVGGLRFEGHRGQPVGGLRF
EGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQQG
VGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGP
VPGGGLRIEGPLGQGGPRFEGCHGLRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQ
RFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGARFDNHPSQRLESISFNQTG
PYNEPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGHGNQSFSNPLNRASGHYFDEK
NLQSSQFGNFGNLPAPITVGNIQASQQVMTGVAQPVPFGQGQQFLPVHPQNPGAFVQNPS
GALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQINEVAAQPPPEEEEDQNED
QDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTE
KDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSV
PAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTP
SPSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQVDTPPSCTEESIATPTEIKTENDTV
KSV
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggacgagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaagttacgttcc
acatgggatgaaatattcccattgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctaccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcccgaagagccttcaacgcctggcacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacagaagaatcttacccaa
gaacaactaataaggcagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgaactagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaattacatgtttcacaa
attccccctatggcggttaaagctccccatcaggttcctgtgcaacctgagaaaagccgt
ccaggtccatccttacaaattcaagatttgaaaggaactaaccgggatccccgtcttaat
aggatgagtcagcattcttctcatggaaaagatcagagtcacagaaaagaattcctaatg
aacacattgaaccaatctgatactaaaacaagtaaaactgtaccctctgaaaaactgaat
tcatccaaacaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttagattctaaatctaagtctaaatcaccatcacctttaaaaaacaaattatcccacacg
aaagacttgaaaaatcaagactctgaaagcacgagggtgtctgatatgagcaagagagat
ccaagattaaaaaaacatcttcaggataaaactgatagcaaagaagatgatataaaagag
aagagaaaaactgcagagaaaaaggataaagatgagcatatgaaatcatctgaacacaga
ttggttggaagtagaaataaaatcattaatggcattgtacaaaaacaggatacaatacca
gaagaattggaaaaacagggaacaaaaccaggaagatcgagtaatagaaagcgatcaaga
tcgcgatcacccaaatctcgatcaccaattatacattctccaaagagaagagataggcgg
tcacccaaacgaaggcaaaggagtatgtctccaacctcgacacccaaagttgggaagatt
cgccaatcaggagttaagcagtcacatatggaagaatttgcgccaccttccagagatgaa
agaaatgctaagagaagtactaaacaggatgttcgagatccaaggcgaataaaaaagagt
gaagaggaacgaccacaagaaactgcaaatcagcattctacaaagtcaggcactgaacca
aaggagaatgtagaaaattggccaagttccaagtctagtaaacgatggaaacctggttgg
gaagaaaataaaagcttacaacagggtgatgaacatagtaaatctcctcatctaaggcat
agggaaagctggtcaagcactaaaggaatattgtcacctcgagccccaaagcaacagcat
cgattaagtgtagatgccaatcttcagattcctaaagagttaactcatgcaaacaaaaga
gaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggatgagttc
cttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacatagatgc
aatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacctctctta
tctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacaggttcag
cattcatttccaagacttgatctcttagatcctgatatttttgactaccctttgactgat
gccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtaggaatagt
ggagcgcagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttctcctata
tctgggagtcgtacttatgctgagaatcttgcaccccatgagggccggagaagacatgac
gagcaagtctctgctaaaggtgtacgagaagagcagaggtcaccattcaatgatcgtttt
ccacttaagcgacctagatatgaagattcagataaaccatttgtagatagccctgcttca
cgattcgccggcctcgatacaaatcagcgacttacagctttagctgaagacagaccatta
tttgatggacctagtaggccatcagtaccaagagatggcccaaccaagatgatttttgaa
ggacctaataaattaagccctagaattgatggacctcccacaccaggttctcttcggttt
gatgggtcacctggacaaatggggggaggtggccctttgagatttgaagggccacaaggt
cagctaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtagggacacct
ttgcggtttgaggggccaattggtcaagcaggaggaggtggttttcggtttgaaggttcc
cctggtctgaggtttgagggatctgcaggtggtctgcgatttgaaggaccagggggccag
tctgtgggtggtctcagatttgagggacatcggggtcaacctgtgggtggtctcaggttt
gagggacctcatggtcagcctgtgggtggacttagatttgataatccccgaggtcagcct
gtaggtggacttagatttgaggggggtcatggtccatcaggggctgcaattaggtttgat
ggacctcatggtcagccagcaggtgggattagatttgagggccctttgctacagcaggga
gttggaatgaggtttgagggcccgcatggtcagtcagtagctggtctaaggtttgaagga
caacataaccaacttggtgggaaccttaggtttgagggtccacatggtcaaccaggggtt
gggatcaggtttgagggacctttagtccagcaaggaggtggaatgaggtttgagggtcct
gtaccaggaggtggcctgagaattgaagggcccctgggtcaaggtggtccaagatttgaa
ggctgtcatggtttaaggttcgatggacagccaggtcagccatcactcttgccaagattt
gatggattacatggtcagccaggtcctagatttgaaagaaccggtcagccaggcccacag
agatttgatggaccacctggacagcaggttcaaccaagatttgatggtgtacctcaaaga
ttcgatggtccacaacaccagcaggcatcaaggtttgatattcctctcggtcttcaaggc
gcacgatttgacaatcatccttcacaaaggcttgaatcaatttctttcaatcagactggt
ccatataatgagccacctggcaatgcttttaatgccccatcccaaggattgcagttccaa
agacatgaacaaatatttgattcacctcaaggaccaaattttaatggaccacatggccat
ggaaaccagagtttctcaaatccccttaacagagcttctggacactattttgacgaaaag
aatcttcagagttctcaatttggaaactttggcaatttacctgctccaataacagtagga
aatattcaggcatctcaacaggttatgactggtgttgctcagccagtaccatttggccaa
ggacagcagtttttaccagttcatccacaaaatccaggagcatttgttcagaatccttca
ggagctcttccgaaggcataccctgataatcatctcagtcaggtggatgtaaatgaatta
ttttcaaaactgctaaaaacaggaattctcaaattgtcccaacctgattcagccacaaca
caaataaatgaagttgctgctcagcctccccccgaggaggaggaagatcaaaatgaagat
caggatgttccagatcttaccaattttacaattgaagaattgaaacaacgttatgatagt
gttataaatcgactgtacactggtattcagtgttactcttgtggaatgagatttacaaca
tcacagacagatgtatacgcagatcacttggactggcattatcggcaaaatagaactgaa
aaagatgttagcagaaaagtcactcatagacgttggtactacagtttaacagactggata
gaatttgaggaaatagcagatctcgaagaacgtgccaagagccagttttttgaaaaggtg
catgaagaagttgtgctcaaaacgcaggaggctgctaaagaaaaggagttccagagtgta
cctgcggggccagcgggagcagttgagagttgtgaaatctgtcaagaacaatttgaacaa
tactgggatgaagaagaggaggaatggcatttaaaaaatgctatcagagtagatggaaag
atttatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgtacacca
tctcccagcaagacaccagttgaaaaccccttgaacattatgttgaacattgtcaaaaac
gaattgcaggaaccttgcgaaagtcccaaagttaaggaagaacaagttgataccccacca
tcttgtacagaggaaagcatagcaacacccactgaaattaaaacagaaaatgatacagtc
aagtcagtttaa
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integrated database retrieval system
