Rhizobium sp. Pop5: NE852_25385
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Entry
NE852_25385 CDS
T11439
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rhip Rhizobium sp. Pop5
Brite
KEGG Orthology (KO) [BR:
rhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhip03016
]
NE852_25385
Enzymes [BR:
rhip01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NE852_25385
Transfer RNA biogenesis [BR:
rhip03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NE852_25385
Prokaryotic type
tRNA splicing ligases
NE852_25385
BRITE hierarchy
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GFIT
Other DBs
NCBI-ProteinID:
UVD59369
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Position
pRsp_Pop5_4:341452..342858
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AA seq
468 aa
AA seq
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MSGQDLIDAGMSQGKWFRPALDAANAVLSKGGSVTDALEAAKAFQPGPTLALRADNDIEI
YSNIRAENAFEQDNVEKVNATMRALVRTPVVRAAAIMPDACPAGPVGTIPVGGVVASEAI
HPGMHSADICCSMAISIFPSVDPKSLLDAVHAVTHFGPGGRPRGAQLKPSEATLSAFQQN
PYLREGVLSAGIEHFATQGDGNHFAYVGTMKSTGETALVTHHGSRAPGARLYDRGMKVAN
RFRERISPETHRENAWIPADTEEGDFYWSALQTIRQWTRENHYILHDMAAEKLSAKVADR
FWNEHNFVFRKSDGLFYHGKGATPAFDNWAHDATDLTIIPLNMAEPILIVRGSNAAHGLG
FSPHGAGRNFSRSAHMRQLSAEYGADSRGLSPNNIAAIMEKETSGLDAQFFSGFADVSEL
PSAYKNAANVRAQIEHYGLAEVVDEVIPYGSIMAGDWQKNAPWRKKRQ
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagcggacaggatttgatcgacgccggaatgagccaggggaaatggtttcgcccggct
ctcgacgcggccaacgcggttttgagcaagggtggctcggtaacggatgcgctggaagcg
gcaaaagctttccagcccgggccgacgcttgccttgagggccgataacgacatcgagatc
tattccaacatccgtgccgagaatgcctttgagcaggataatgtcgagaaggtcaacgcg
acgatgcgcgcgctggtgcgcacacccgtcgtccgggccgctgcgatcatgccggacgct
tgcccggcaggtcctgtcggaacgatcccggtcggtggtgtggttgcgtccgaagcgatc
catccgggcatgcattcggccgatatctgctgctccatggcgatctcgatctttcccagc
gtggatccgaagtcgcttctggacgctgtgcatgccgtgacgcatttcggtcccggcggc
cgtccgcgcggcgcacaactcaagccttctgaggcaacgctttcggccttccagcagaat
ccttatctgcgcgagggtgtgctgagcgctgggatcgagcatttcgcgacccagggcgac
ggcaatcatttcgcctatgtcgggacgatgaagtcgaccggcgaaaccgcgcttgtgacc
catcatggatcgcgagcaccgggggcacggctctacgacaggggcatgaaggtcgccaac
cggtttcgggaacgcatctcgcctgagacgcatagggaaaatgcctggattccagcggat
accgaggaaggtgacttctactggtcggcgctgcagacgatccgccagtggaccagggaa
aaccactatatccttcacgacatggcggcggaaaagctctcagccaaggtcgcggaccgc
ttctggaacgaacacaatttcgtcttccggaagtcggatgggctgttctaccacggaaag
ggtgcgacccctgccttcgacaactgggcgcatgacgcgaccgatctgaccatcattccg
ctcaatatggcggaaccgatcctgatcgttcggggctcgaacgctgcccatggtctcggc
ttctcgccgcatggtgccggtcgcaacttttcgcgcagcgcgcatatgaggcagctgtct
gcggagtatggagcggattcacgagggctcagcccgaacaacatcgcggccattatggag
aaggaaacaagcggtctcgacgcgcagtttttctctggtttcgccgatgtgtcggaactg
ccgagtgcctacaagaatgctgcgaacgtgcgggcacagatcgagcattacggcttggcc
gaagtggtcgacgaagtgatcccctacgggagcatcatggccggcgactggcagaagaac
gcaccctggcgcaaaaagcggcagtaa
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