Rhizobium sp. SRDI969: N2A41_07680
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Entry
N2A41_07680 CDS
T11552
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rhis Rhizobium sp. SRDI969
Pathway
rhis03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N2A41_07680 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhis03021
]
N2A41_07680 (rpoB)
03400 DNA repair and recombination proteins [BR:
rhis03400
]
N2A41_07680 (rpoB)
Enzymes [BR:
rhis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N2A41_07680 (rpoB)
Transcription machinery [BR:
rhis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N2A41_07680 (rpoB)
DNA repair and recombination proteins [BR:
rhis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N2A41_07680 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
UWM83122
LinkDB
All DBs
Position
1526256..1530395
Genome browser
AA seq
1379 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRPDEGLQAVFK
SVFPITDFSGASMLEFVSYEFEPPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYKR
DGEGWRIPFKPETLKGAKAITEMVDADTGEVVVEAGKKLTPRLLRQLSDKGLKALKAADD
DLYGNYLAGDIVNYSTGEIYLEAGDEIDEKTLGIILANGFDEIPVLGIDHINVGAYIRNT
LTADKNENRQDALFDIYRVMRPGEPPTMESAEAMFNSLFFDAERYDLSAVGRVKMNMRLD
LTVEDTVRILRKDDILAVVRMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRRIVDGKVTSDVLYLSAMEEAKYYVAQANAEMNADGSFVDEFVVCRHAGEVMLAPRDSM
NLMDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVAR
DSGAAIGARRGGVVDQVDATRIVIRATEDLEAGKSGVDIYRLQKFQRSNQNTCVNQRPLV
TVGDEVNRGDILADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVADDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTIVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLIEMLRGQASIAGPKGFKKGSELSNAVVSEYPRSQWW
MFAVEDEKVQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETHLG
WACAGMGRQIGELIDAYKANGNIEPLRKTIGDVVGDGPKAEQVHEFDDDSVLRLADQWKR
GVSIATPVFDGANEADVNDMLRLAGLKDSGQSTLYDGRTGEQFDRQVTVGYIYMLKLNHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENTKLDEAQAAQLPDAAE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgttcaacggtcgcaggcgcgtacgcaagttttttggtaagatc
cccgaagtcgcagaaatgccgaacctcatcgaggttcagaaggcgtcctacgaccagttt
ctgatggttgaagagccgaagggcggccggcccgacgagggccttcaggccgtcttcaag
tcggttttcccgatcaccgatttctccggcgcatcgatgctggaattcgtgtcctacgaa
ttcgaaccgccgaagttcgacgttgacgaatgccgtcagcgcgacctgacctatgcggcg
ccgctgaaggtgactctgcgcctcatcgtgttcgatatcgacgaggataccggcgcgaag
tcgatcaaggacatcaaggaacagtccgtctacatgggcgacatgccgctcatgaccaac
aacggcacgttcatcgtcaacggtaccgagcgcgtcatcgtctctcagatgcaccgttcg
ccgggcgtcttcttcgaccacgacaagggcaagagccattcgtccggcaagctgctcttt
gctgcgcgcgtcatcccttatcgcggttcctggctcgatatcgaattcgacgccaaggac
atcgtctacgcccgtatcgaccgccgccgcaagatccctgtgacgtcgctgctgatggcg
ctcggcatggacggcgaggaaatcctcgacactttctacacgaagtcgctctacaagcgc
gacggcgaaggctggcgtattcctttcaagccggaaacgctgaagggtgccaaggcgatc
accgagatggtcgacgccgataccggcgaagtcgtcgtggaagccggcaagaagctgacc
ccgcgcctgctgcgccagctttccgacaagggcctgaaggcactcaaggccgccgacgac
gatctttacggcaactaccttgccggtgacatcgtcaactactcgacgggtgaaatctac
ctcgaggctggcgacgaaatcgacgagaagacgcttggcatcatcctggcgaacggcttc
gacgagatcccggttctcggcatcgaccacatcaatgtcggcgcctatatccgcaacaca
ctgacagccgacaagaacgagaaccgtcaggacgctctgttcgacatctaccgcgtcatg
cgtccgggtgagccgccgaccatggaatcggcggaagccatgttcaactcgctgttcttc
gatgcggagcgttacgacctctccgccgtcggccgcgtcaagatgaacatgcgcctcgac
ctgaccgtcgaagacaccgtccgcatcctgcgcaaggacgacatcctggccgtggtcagg
atgctggtcgaactgcgcgatggcaagggcgagatcgacgacatcgacaacctcggcaac
cgccgcgtccgttcggtcggcgagctgatggaaaaccagtaccgtctcggcctgctgcgt
atggagcgcgcgatcaaggaacgtatgtcctcgatcgagatcgacacggtcatgccgcag
gatctgatcaacgccaagccggcagccgccgccgtgcgcgaattcttcggttcctcgcag
ctctcgcagttcatggaccaggtcaacccgctctcggaaatcacccacaagcgccgtctt
tcggctcttggcccgggcggtctgacccgtgagcgcgccggcttcgaagtccgcgacgtg
catccgacccactatggccgcatttgcccgatcgaaacgccggaaggcccgaacatcggt
ctgatcaactcgcttgcgacctttgcccgcgtcaacaagtacggcttcatcgaaagcccg
taccgccgaatcgtcgacggcaaggtgacgagcgacgtgctctacctctccgccatggaa
gaggcgaagtactacgtcgcccaggccaacgccgagatgaacgctgacgggtccttcgtc
gacgaattcgtcgtctgccgtcatgccggtgaagttatgctcgctccgcgcgacagcatg
aacctgatggacgtctcgccgaagcaggttgtttcggtcgcagccgcgctcatcccgttc
ctggaaaacgacgacgccaaccgcgcgctgatgggctcgaacatgcagcgtcaggcagtg
ccgctgctgcgtgccgaagctccgttcgtcgggaccggcatggagccggtcgtcgcccgt
gactcgggtgctgccatcggcgcccgccgcggcggcgtggtcgaccaggtcgacgcgacg
cgtatcgttatccgcgccacggaagacctcgaagccggcaagtccggcgtcgatatctac
cgtctgcagaagttccagcgttcgaaccagaacacctgcgtcaaccagcgcccgctggtc
accgtcggtgacgaggtcaaccgcggcgacatcctcgccgacggcccatcgaccgatctc
ggcgacctggcgctcggccgcaacgcgctcgtcgcgttcatgccctggaacggctacaat
tacgaagactcgatcctgctctccgagcgtatcgttgccgacgacgtgttcacctccatt
cacatcgaggaattcgaagtgatggcacgcgacaccaagcttggtcctgaggaaatcacc
cgcgatattccgaacgtttcggaagaagcgctgaaaaacctcgacgaagccggcatcgtc
tatatcggcgccgaagttcagccgggcgatatcctcgttggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggcgaaaaggcctcc
gacgtgcgcgacacctccatgcgcatgccgcccggcacctacggcaccatcgtcgaagtt
cgcgtcttcaatcgccacggcgttgaaaaggacgagcgcgcgatggcgatcgagcgcgaa
gagatcgagcgtctggcaaaggaccgtgacgacgagcaggcgatcctcgaccgtaacgtc
tacggccgtctgatcgaaatgctgcgcggccaggcctctattgctggcccgaagggcttc
aagaagggcagcgagctttcgaacgccgtcgtctccgaatatccccgctcgcagtggtgg
atgttcgcggtcgaagacgaaaaggtccagagcgagctcgaagcgctccgcggtcagtac
gacgaatccaagtcgcgcctcgaacagcgcttcatggacaaggtcgaaaaggtccagcgc
ggcgatgaaatgccccctggcgtcatgaagatggtcaaggtcttcgtcgccgtaaagcgc
aagatccagcctggcgacaagatggccggccgtcacgggaacaagggcgtcgtctcgcgc
attgtgccggtggaggacatgccgttcctcgaagacggcacgcatgtcgacgtcgttctg
aacccgctcggcgtgccttcgcgtatgaacgtcggccagatcctggaaacccatctgggt
tgggcttgcgccggcatgggtcgccagatcggcgaactgatcgacgcatacaaggccaat
ggcaacattgagccgctgcgcaagaccatcggcgatgtcgtcggagacggccccaaggcc
gagcaggtgcacgagttcgacgacgactcggttctgcgtctcgccgaccagtggaagcgc
ggcgtttcgattgcgacgcctgttttcgacggcgcgaacgaagccgacgtcaacgacatg
ctgcgtttggcaggtcttaaggatagcggtcagtcgacgctctatgacggccgtaccggc
gagcagttcgaccgccaggtgacggtgggctacatctacatgctgaagctcaaccatctg
gtcgacgacaagatccatgctcgttcgatcggtccttactcgctcgtgacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggcgaaatggaagtctgggcgctc
gaagcatacggcgcggcctacacgctgcaggaaatgctgacggtgaagtcggatgacgtc
gccggccgtaccaaggtctacgaagccatcgtccgcggagacgacacgttcgaagccggt
attccggaaagcttcaacgttctcgtcaaggaaatgcgctcgctgggcctcagcgtcgag
ctcgagaacaccaagcttgacgaggcgcaggcagctcagctgcccgacgcggccgagtaa
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integrated database retrieval system
