Rhizobium sp. SRDI969: N2A41_10400
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Entry
N2A41_10400 CDS
T11552
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhis Rhizobium sp. SRDI969
Pathway
rhis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N2A41_10400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhis03019
]
N2A41_10400
03009 Ribosome biogenesis [BR:
rhis03009
]
N2A41_10400
Enzymes [BR:
rhis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N2A41_10400
Messenger RNA biogenesis [BR:
rhis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N2A41_10400
Ribosome biogenesis [BR:
rhis03009
]
Prokaryotic type
rRNA helicases
N2A41_10400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WHIM1
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UWM83602
LinkDB
All DBs
Position
complement(2060365..2062335)
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AA seq
656 aa
AA seq
DB search
MTEFNGVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAP
TLLEGRERFGNAGAPLALVIAPTRELALQVKRELEWLFEMTGAVIASCVGGMDIRSERRT
LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDAAPDER
RTLMFSATVPAAIAKLAKSYQRNAVRISTAAGEKQHIDIEYRALMVAPSDRENAIINVLR
YYEATNAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERTHALQAMRDGRARVCIA
TDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL
ENAGISAAWARPPSAEEVSERDDERLLADPIFNETPQEEEQGLVQQLLASHGAEKLAAAF
LRLYRTNHSAPEDLIEVTVQDERSRKRRDNAEPYEPAQKGPREDFGASVWFSVSVGRKQN
AEPRWLIPMLCRNGNVTKREIGAIKMQPEETYVEIAAASAESFLAAIGPNKALERGIRVT
RLPGTPDFNRAPASKPYAGKPSRDERPDDSFRGERPKNKFGKGPGGGYAAADNSGGERRD
SKPWSKKPGKPAFDGPKSDKPKYDKPKFEGSRSEGPKYEGKGGSAPKNKFSKKKPG
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgacagaattcaacggcgtcgttccggcgatcgccaaggcgttgcagaagcgcggttac
gccgaacttaccccggtgcagaaggcgatgctcgatccggcgctcgccgcttccgacgcg
ctggtctcggcccagaccggctccggcaagaccgtcgccttcggcctggcgctggcgccg
acgctgctcgaaggcagggagcgcttcggcaatgccggagctccgctcgccctcgtcatc
gccccgacgcgcgaacttgccctgcaggtgaagcgcgaactcgagtggctctttgagatg
accggcgccgtgatcgccagctgcgtcggcggcatggacatccgcagcgagcgccgcacg
ctcgaacgcggcgcccatattgtcgtcggcacgcctggccggctctgcgaccatattcgc
cgcagggcgctcgacatgtcggaactgaaggctgccgtgctcgacgaggccgacgagatg
ctcgatctcggcttccgcgaggatctcgaattcattctcgatgccgcgccggacgaacgc
cggacgctgatgttttcggcgacggtgccggcggccatcgcgaagcttgccaagagctac
cagcgcaatgccgtgcgcatcagcaccgcggccggggaaaagcagcatatcgacattgaa
tatcgcgcgctaatggtcgccccgagcgaccgcgagaatgcgatcatcaacgtgctgcgc
tattatgaggcgactaatgccatcgtgttctgctcgacgcgtgctgccgtcaaccatctg
acggcgcgcttcaacaatcgcaatttcgccgtggtggcactgtccggcgagctgactcag
aacgagcgcacccacgcgctgcaggcgatgcgcgacgggcgcgcccgtgtctgcatcgcg
accgacgttgccgcccgcggcatcgacctgccgggactcgatctcgtcatccatgccgac
ctgccgaccaatccggacacgctgctgcaccggagcggccgcaccggccgggccggacgc
aagggcatcagcgccatgatcgtgccgctgaatgcacggcgcaaggcagagcgcctgctc
gagaatgccggtatttcggctgcctgggcgcgaccgccttcggccgaggaagtgagcgag
cgcgacgacgagcggctgcttgccgatccgatcttcaacgaaacgccgcaggaggaagag
caggggctggtacagcagcttctcgccagccacggcgccgaaaagctcgccgccgctttc
ttacgtctttaccgcaccaatcattcggcgccggaggacctcatcgaggttaccgtacag
gacgagcgcagccgcaagcgccgcgacaatgccgagccctacgagccggcgcagaaggga
ccgcgcgaagatttcggcgccagtgtctggttctccgtctcggtcgggcgcaagcagaat
gccgaaccgcgctggctgatcccgatgctctgccgcaacggcaatgtgacgaagcgcgaa
atcggcgcgatcaagatgcagcccgaggaaacctatgtggagatcgccgcggcgagtgcc
gaaagcttcctggcggcgatcggaccgaacaaggcgctcgaacgcggcatccgcgtgacc
aggcttcccggcacgccggatttcaaccgggcgcctgcgtcaaaaccctatgccggcaag
ccatcccgcgacgagcggccggacgattcgttccgcggcgagcggccgaagaacaagttc
ggcaagggtccgggcggcggatatgctgccgccgacaatagcggcggggaaagacgggat
agcaagccctggagcaagaagccgggcaagcccgccttcgatggcccgaagtccgacaag
ccgaaatacgacaagccgaaattcgaaggctccagatccgaaggccccaaatatgagggc
aagggcggcagcgcaccgaagaataagttttcaaagaagaagcccggctga
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