KEGG   Rhizobium sp. SL42: IM739_02825
Entry
IM739_02825       CDS       T11805                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
rhiu  Rhizobium sp. SL42
Pathway
rhiu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rhiu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IM739_02825 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rhiu03021]
    IM739_02825 (rho)
   03019 Messenger RNA biogenesis [BR:rhiu03019]
    IM739_02825 (rho)
Transcription machinery [BR:rhiu03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     IM739_02825 (rho)
Messenger RNA biogenesis [BR:rhiu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     IM739_02825 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 S1CSD-TOTE-2 NACHT AAA DUF6360
Other DBs
NCBI-ProteinID: UJW75464
LinkDB
Position
complement(638007..639272)
AA seq 421 aa
MAEMKLQELKSKSPTDLLTFAESLEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFEDPEKIRHKVHFDNLTPLYPNERFKMELDIPTTKDLSARVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPS
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKNNGDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagctacaagaacttaaaagcaaatcgccgaccgatctgctgactttc
gccgaatcgctcgaagtcgaaaatgcaagcaccatgcgcaagcaggagctgatgtttgcg
atcctcaagatgctggcgagccaggatgtggaaatcatcggcgaaggcgtcgttgaagtt
cttcaggatggcttcggcttcctgcgttcggccaatgccaactacctgccgggcccggac
gacatctatatctcgccgtcgcagatccgcagattctccctgaagacaggcgataccgtc
gagggacccatccgtgggcccaaggaaggcgaacgctatttcgcgctgctcaaggtcaat
acaatcaatttcgaagaccctgagaagatccgccacaaggtgcacttcgacaatctgacg
ccgctctatccgaacgagcgcttcaagatggaactggatattccgacaacgaaagacctt
tcggcccgtgtgatcgatctcgttgcgccactcggcaaggggcagcgcggcttgatcgtc
gctccgccacgcaccggtaagacggtactgctgcagaacattgctcattcgatcacagca
aaccatccggaatgctacctgatcgttctgctgatcgatgaacggccggaagaagttacc
gacatgcagcgctcggtgaagggcgaagttgtgtcttcgaccttcgatgagccggcagtt
cggcacgtccaggtggccgaaatggtcatcgagaaggccaagcggcttgtcgagcacggc
cgcgatgtggtcatcctgctcgactcgatcacccgtcttggtcgagcctacaacacggtg
gttccgtcttccggcaaggtcctgaccggtggtgtggatgccaatgcccttcaacgcccg
aagcggttctttggcgctgcgcgtaacatcgaagagggcggttcgctgacgatcatcgcg
acggccctgatcgacaccggcagccgcatggatgaagtcatcttcgaagaattcaagggt
acgggcaactcggaaatcgtgcttgatcgcaaggttgccgacaaacgtatcttcccgtcg
atggacattctgaagtcgggtacgcgtaaggaagacctgctcgtcccacgccaggatctc
cagaagatctttgtgctacgccgtatcctggccccgatgggcaccaccgatgcgatcgag
ttcctcatcgacaagctcaagcagacgaagaacaatggcgacttcttcgattcgatgaac
acctga

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