Rhizobium sp. WYJ-E13: KQ933_12520
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Entry
KQ933_12520 CDS
T11043
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhiw Rhizobium sp. WYJ-E13
Pathway
rhiw03420
Nucleotide excision repair
rhiw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhiw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KQ933_12520
03430 Mismatch repair
KQ933_12520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhiw03400
]
KQ933_12520
Enzymes [BR:
rhiw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KQ933_12520
DNA repair and recombination proteins [BR:
rhiw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KQ933_12520
MMR (mismatch excision repair)
Other MMR factors
KQ933_12520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
DUF4420
Motif
Other DBs
NCBI-ProteinID:
QWW66446
LinkDB
All DBs
Position
2475216..2477711
Genome browser
AA seq
831 aa
AA seq
DB search
MSNSFDDMPFFDEEPGEAPRKPQQPAAPAPRAPAVGGGIAARAMAARDGTRPDYLAGLNP
EQREAVETLEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAFPSQILAVTFTNKAAREMKE
RIALLVGGAVEGMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVIRLIKQIIQAEG
LDDKRWPAKQFAGMIDTWKNKGLGPADIPEGDARAFANGRGRDLYFAYQNRLSTLNACDF
GDLLMHPIAIFRKQPDLLKEYHQKFRYILVDEYQDTNTAQYMWLRLLAQRAKGEPQNVCC
VGDDDQSIYGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTAHILGAAAHLITHNEGRLG
KTLFTDRSDPDDVKVQVHASWDSEEEARAIGEEIERLQRGDADGRKHLLNDMAILVRASF
QMREFEDRFVTLGLNYRVIGGPRFYERLEIRDAMAYFRLVAQPADDLAFERIINTPKRGL
GDTTVRALHDYARARDIPMLAAAADMIETDELKPKARKALFDVIQSFRRWQELLENTPHT
ELAEQILEESGYTDMWKNDKSAEAPGRLENLKELIRSMESFESMRGFLEHVSLVMDAETN
ENLDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRSLDESGRAGLEEERRLAYVGITRA
KHRCHIWFVSNRRIHGLWQSTIPSRFLDELPETHVEVAEMEQNYGGYGRGGGYGQSRFDK
ADPFANSYSTPGWKRAQQNKTDATRDNWGTRSGHAVERIGYGESGPRGRTIEGELVAKST
ATEPSRFALGDRVFHIKFGNGSISGIEGNKLTIDFDRAGQKRVLDGFVERV
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatagtttcgacgatatgcccttcttcgacgaggaaccgggcgaagcgccgcgc
aaaccgcaacagcctgcagcacctgccccaagggcgccggctgtcggcggcggcattgcc
gcccgcgccatggcggctcgtgatggcactcgccccgattatctcgccggcctcaacccg
gaacagcgcgaagcggtcgagacgctggaaggccccgtcctcgtgcttgccggcgctggc
accggcaagacccgcgttctgaccacccgtatcgcccacattctttcgaccggacgagcc
ttcccctcgcagatcctcgccgtgaccttcaccaacaaggccgctcgcgaaatgaaggag
cgtatcgcgcttctcgtcggcggcgccgttgaaggcatgccctggctcggcaccttccac
tcgatcggcgtcaagctcctgcgccgccatgccgaactcgtcggcctgcgctccgatttc
accatcctcgacaccgacgatgtgatccgcctcatcaagcagatcatccaggccgagggg
ctcgacgacaagcgctggccggccaagcagttcgccggcatgatcgatacctggaagaac
aagggcctcgggccggccgatattcccgaaggagatgcgcgcgccttcgccaatggccgc
ggccgcgacctctacttcgcctatcagaaccgcctgtcgacgctgaacgcctgcgatttc
ggcgatctcctgatgcatccgatcgcgatcttccgcaaacagccagatctcttgaaggaa
tatcaccagaagttccgctacattctcgtcgacgagtatcaggacaccaacaccgcccaa
tatatgtggctgcggcttctcgcccagcgtgccaagggcgagccgcagaatgtctgctgc
gtcggcgacgacgaccaatccatctatggctggcgcggtgcggaagtggacaatatcctc
cgcttcgaaaaggattttccaggcgccaaggtcatcaagctggagcgcaactaccgctcg
acggcccatatcctcggtgccgccgcccatctcatcacccataatgaaggccgcctcggc
aagacgctcttcaccgaccgctccgatcctgacgatgtcaaggtgcaggtccatgcctcc
tgggattccgaagaagaagcgcgtgccatcggcgaggaaatcgagcgcctgcagcgcggc
gacgccgacggcaggaaacatctgctgaacgacatggcgatcctcgttcgcgcctccttc
cagatgcgcgaattcgaagaccgcttcgtcacgctcggcttgaactaccgcgtcatcggc
ggtccgcgcttctacgagcgcctcgaaatccgcgatgccatggcctatttccgcctcgtc
gcccagccagccgacgacctcgccttcgagcgcatcatcaatacgccgaagcgcggcctt
ggcgatacgacggtgcgcgcgcttcacgattatgcccgcgcccgcgacattccgatgctg
gcggccgccgccgacatgatcgagacggacgagctgaagccgaaggcgcgcaaggccctt
ttcgacgtgattcaatctttccgccgatggcaggaactgcttgaaaacacaccacatacc
gaacttgccgagcagatcctcgaagagtccggatataccgacatgtggaagaacgacaag
agcgccgaagcgccgggtcgccttgaaaacctcaaggaactcatccgttccatggaaagc
ttcgaatccatgcgcggcttcctggagcacgtctcgctcgtcatggatgccgagaccaac
gaaaatctcgacgccgtctctatcatgacgctgcactcggccaagggcctggaattcgac
actgtcttcctgcccggctgggaggaaggcctcttcccacaccagcgttccctcgacgaa
tccggtcgcgccggcctggaggaagaacgccgcctcgcctatgtcggcatcacccgcgcc
aagcaccgctgccacatctggttcgtctccaaccgccgcatccacggcctgtggcaatcg
accattccctcgcgcttcctcgacgaactgccggaaacccatgtggaagtggccgagatg
gagcagaactatggcggctacggccgcggcggcggttacggccagtcgcgattcgacaag
gccgatcccttcgccaattcctattcgactccaggctggaagcgcgcccagcagaacaag
accgacgccacccgcgacaactggggcacccgctccggccatgcggtggagcgcatcggc
tacggtgaaagcggcccgcgcggccgcaccatcgagggcgaactggtggcgaaatccacc
gccaccgaaccctcgcgcttcgccctcggcgaccgcgtcttccacatcaaattcggcaac
ggctcgatatccggcatcgaaggcaacaagctgacgatcgacttcgaccgcgccggccag
aagcgcgtgctggacgggtttgtggagcgggtctga
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