KEGG   Rhizobium sp. WYJ-E13: KQ933_19560
Entry
KQ933_19560       CDS       T11043                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
rhiw  Rhizobium sp. WYJ-E13
Pathway
rhiw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rhiw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KQ933_19560 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rhiw03021]
    KQ933_19560 (rho)
   03019 Messenger RNA biogenesis [BR:rhiw03019]
    KQ933_19560 (rho)
Transcription machinery [BR:rhiw03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     KQ933_19560 (rho)
Messenger RNA biogenesis [BR:rhiw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     KQ933_19560 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT S1CSD-TOTE-2 DUF6360 AAA
Other DBs
NCBI-ProteinID: QWW67766
LinkDB
Position
complement(3952544..3953809)
AA seq 421 aa
MAEMKLQELKSKSPTDLLAFAESLEVENASTMRKQELMFAILKVLASQDIEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFKMELDVPTSKDLSPRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKNNGDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagcttcaggaacttaagagtaaatccccgacggatcttttggctttt
gccgaatcgctcgaggtcgagaatgcgagcacgatgcgcaagcaggagctcatgtttgca
atcctcaaggttcttgccagtcaggatatcgaaatcatcggcgaaggcgttgtagaagtc
ctgcaggatggtttcgggtttcttcgttccgcaaatgccaactatctgcccggcccggac
gatatctacatctctccttcccagatccgtcgcttctcgctgaagaccggcgatacggtg
gagggtccgatccgtggtccgaaggagggcgaacgctatttcgcgcttctaaaggtcaac
acgatcaattttgacgatccggaaaagatccgtcacaaggtccacttcgacaacctgacg
ccgctctatccgaacgagcgtttcaagatggaacttgatgttccaacctccaaggatctt
tcgccgcgcgtcatcgatctcgtggcgcctctcggcaaaggccagcgcggtctgatcgtt
gctccgccgcgtacgggtaaaacggttctcctgcagaacatcgctcactcgatcaccgcg
aatcatcccgaatgctatctgatcgttctgctgatcgacgaacgtccggaagaagtcacg
gacatgcagcggtcggtccgcggagaagtcatttcgtcgacattcgatgagccggcggtc
cggcacgttcaggtcgccgaaatggtgatcgaaaaggccaagcgccttgtggaacacggc
cgcgatgtcgtcatcctgctcgattccatcactcgccttggtcgagcctacaataccgtc
gttccttcctcgggtaaggttctgaccggtggtgttgacgcgaatgccctgcagcgcccg
aagcggttcttcggcgcagcacgcaatatcgaagaaggtggatcgctgaccattattgcg
acagcgctcatcgacaccggcagccgtatggacgaggtcatcttcgaagagttcaagggt
accggtaactcggaaatcgttctcgaccgcaaggttgccgacaagcgtatcttccccgcg
atggatattctcaagtcgggcacccgcaaggaagatctgctcgttccgcggcaggatctg
cagaagatctttgtcctgcgccgtatccttgctccgatgggcacaactgatgcaatcgaa
ttcctcatcgacaagctgaagcagacgaagaataatggtgatttcttcgactcgatgaat
acttga

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