Rhizobium sp. WYJ-E13: KQ933_28765
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Entry
KQ933_28765 CDS
T11043
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
rhiw Rhizobium sp. WYJ-E13
Pathway
rhiw04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rhiw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
KQ933_28765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhiw03019
]
KQ933_28765
03009 Ribosome biogenesis [BR:
rhiw03009
]
KQ933_28765
04131 Membrane trafficking [BR:
rhiw04131
]
KQ933_28765
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rhiw04147
]
KQ933_28765
Messenger RNA biogenesis [BR:
rhiw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
KQ933_28765
Ribosome biogenesis [BR:
rhiw03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
KQ933_28765
Membrane trafficking [BR:
rhiw04131
]
SNARE
SNARE associated proteins
Others
KQ933_28765
Autophagy
Aggrephagy
Other aggrephagy associated proteins
KQ933_28765
Exosome [BR:
rhiw04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
KQ933_28765
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_5
AAA_16
AAA_2
AAA_22
AAA_14
CDC48_2
AAA_33
AAA_lid_PRS2_C
TIP49
IstB_IS21
nSTAND3
AAA_28
ABC_tran
NPHP3_N
RNA_helicase
Mg_chelatase
AAA_18
AAA_7
AAA_17
DUF815
AAA_3
Vps4_C
nSTAND_NTPase5
AAA_24
AAA_30
PhoH
Sigma54_activat
TsaE
Parvo_NS1
ATP-synt_ab
ATPase_2
Zeta_toxin
NB-ARC
bpMoxR
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QWW70801
LinkDB
All DBs
Position
unnamed1:complement(1590063..1592315)
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AA seq
750 aa
AA seq
DB search
MSVSDDQILTLQVANMRPQDAGTSIARLSSAAMGKLGIREGDLIELVGKRHTAAVAMRPY
PDDEGLNIVRLDGLQRVNAGVTSGDHIEIRKAEARPATKVVLAPAQKNLVLQGSGEALQR
TFLQMPMVAGDVVSTSVQQRIRDPRFSLPAYGLQEIRLVVVSTQPRGIVQMTEQTTVELR
PQFEEPKEARRADVTYDDIGGLGSSVEQVREMVELPLRHPELFQRLGIDPPKGVLLYGPP
GTGKTLLARAVANETEANFYHIAGPEIMGSRYGESEERLRQVFQEASQNAPSIIFIDEID
SIAPKREQVTGEVERRIVAQLLTLMDGLEPRQNIVVIGATNRRDAIDEALRRPGRFDREI
VIGVPDQNGRREVLAIHTRGMPLAEDTDLDEIARTTYGFVGADLGALVREAAMDALRRVL
PDINLREGIPSDVLEKLTVSQDDFMSAMKRIQPSALREIMIQAPNVRWDDVGGLDEAQMK
LKEGVELPLRAPQSFKRMGIRPAKGFLLFGPPGTGKTLLAKAVAREAEANFVATKSSDLL
SKWYGESEQQVSRLFERARQVAPTVIFIDEIDSLAPVRGGGLGEPAVTERVVNTLLAEMD
GLEDMQGVVVMAATNRPNLLDPALLRPGRFDELVYVPVPDAKARLKILRIHTKKMPLAKN
IDLDELAEQTVRFTGADLEDLTRRAGLIALRRSLDASTVTKEDFSKALHEVRPSVTPEME
QEYEEMLRTLRQESPQRRQIGFTPLRQAAE
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtctcagatgaccagatacttacgctgcaagtggcaaatatgaggccgcaggat
gcgggaacaagcattgcgcggctgtcttcggcagcaatgggcaagcttggtattcgagag
ggtgacctcatcgaactcgtcggcaagcgtcatacggctgcggtcgccatgcgcccttat
cccgacgacgaaggactgaacattgtgcgcctcgacggcctgcaacgtgtgaatgccgga
gtgacgagcggagaccatatcgaaatccgcaaagccgaggcgcgtcccgcgacaaaggtc
gttctggcgccagcgcagaagaatttggtgctacagggatcaggtgaggctctgcagcga
accttcctccagatgccgatggttgcaggcgatgtcgtgtcgacttcggtgcagcagcgc
ataagggacccgcggttcagtcttccggcttacggtcttcaggaaatcaggctcgttgtc
gtctcgacgcagcctcgcggcatcgtccagatgacggagcagaccacagtcgagctgcgt
ccgcagttcgaggagccgaaggaagcccgccgcgcggatgtcacctatgacgatattggt
ggtctcggctcgtctgtcgaacaggtccgcgagatggtggagcttcccttgcgccatccg
gagctctttcagcgcctcggcatcgatccgccgaagggtgttttgctctacgggcctccg
ggaaccggcaagacccttcttgcccgggcggtggcgaacgagacggaggccaacttctac
catatcgccggaccggaaatcatgggaagccgctacggcgagtcggaggaacggttgagg
caggtcttccaggaagcctcgcagaacgctccctccattatcttcatcgacgaaatcgat
tccatcgcgccgaagcgtgaacaggtcaccggcgaggtcgagcggcgcatcgttgcccag
ctcctgaccttgatggacgggctggaaccccggcagaatattgtcgtcatcggcgcgacc
aataggcgcgatgcgatcgacgaagcgctgaggcgtccaggacgtttcgatcgcgagatc
gtcatcggtgttccagaccagaatggacggcgcgaagtcctggccattcacacacgtggt
atgccgcttgcggaagatacagatctcgacgaaatcgccagaacgacctacggtttcgtc
ggcgcggatctgggggcgctcgttcgggaagccgccatggatgcgttgcggcgcgtgctg
cccgacatcaatcttcgggaagggatcccaagcgacgttctggagaagctgacggtttca
caggatgacttcatgtcggcgatgaagcgtattcagccatcagctttgcgtgaaatcatg
atccaggcacccaacgtgcgctgggatgacgtcggcgggctggacgaagcacagatgaag
ctgaaagagggtgtggagctgccgctgcgtgcgccgcagtccttcaagcgcatgggcatt
cgtccggccaagggtttcctgctcttcgggcctccgggaacaggcaagacactgctggcg
aaagccgtggcgcgcgaggctgaagccaatttcgtggcgacgaagtcatccgatcttttg
tcgaaatggtatggcgagtccgaacagcaggtttcgcgcctcttcgagcgcgccaggcag
gtcgccccgacggttatctttatcgatgagatcgactcgcttgctccggtccgcggcgga
ggcttgggtgagccggcggtgacggaacgtgtggtcaacacgcttctggcagaaatggat
ggcctggaagacatgcagggtgtcgttgtcatggcggcaaccaaccggccaaaccttctc
gatcctgcgcttctgagaccgggccgttttgacgaactggtctacgttccggtccctgat
gcgaaagcacggctaaaaattctccgtatccatacgaagaagatgccgttggcaaaaaat
atcgatttggatgaactcgccgaacagaccgtacgctttacaggagccgaccttgaggac
ttgacgcgtcgcgcaggtctcattgcgctgcgccgatcgctcgacgcctccactgtgacc
aaggaggatttctccaaggctctccacgaagtccgcccgtccgtcaccccggaaatggag
caggaatacgaggagatgctgcggacgctgaggcaagaaagcccgcagcgacgacagatc
ggtttcacgccactgcggcaggctgccgagtag
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