Rhizobium sp. Y9: BLX90_05820
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Entry
BLX90_05820 CDS
T11041
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rhiy Rhizobium sp. Y9
Pathway
rhiy03410
Base excision repair
rhiy03430
Mismatch repair
rhiy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhiy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BLX90_05820
03430 Mismatch repair
BLX90_05820
03440 Homologous recombination
BLX90_05820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhiy03400
]
BLX90_05820
DNA repair and recombination proteins [BR:
rhiy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BLX90_05820
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BLX90_05820
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BLX90_05820
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AUC09754
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Position
1:complement(1192658..1194460)
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AA seq
600 aa
AA seq
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MMEPADTVARAFLSVERSATEQRWVSRLDQAGQNRALAMSQVHGIPELIARVLAGRGVGV
DDALAFLDPTVRSLMPDPHVLTDCEKAAERLVRAIEAGEKVAIFGDYDVDGAASSALMYR
FLAHFGLTPEIYIPDRIFEGYGPNPAAMQQLAANGATLIVTVDCGSTSHESLKAAKEART
DVVVIDHHQVGTELPPAVALVNPNREDDLSGQGHLCAAGVVFLVLVATLRVLKDRRHRQA
FTLDLLSLLDIVALATVCDVVPLKGLNRAYVVKGLIAARHMKNAGLAALFKKAGLGGPVT
PYHFGFLIGPRINAGGRIGDAALGSRLLTIDDSSQAEVIAERLDELNRERQAMEAAMLAE
AEAEALFEYGDGSGAGVIVTARENWHPGIVGLLASRLKDRFRRPAFAIAFDPSGKGTGSG
RSIAGFDMGRMVRAAVEAGLLVKGGGHAMAAGLTVERANLGKLRTFFEEAAAKTVNELVE
SSVLKIDGAIGASGATLQLVDQLEQAGPYGSGHSQPIFAVPAHRLRDVRLVGASHVKITL
EAMDGSRLDGIAFRAAEAPLGQMLMNARGRNIHVAGTVGADLWQGQRRVQLRVLDAAFAP
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgatggagccggccgataccgtggcccgcgcatttttaagcgtggagcggtcggcaaca
gaacagcggtgggtgtctcggctggatcaggccgggcagaaccgtgcgctggcgatgtca
caggtccacggtattccggaactgatcgcccgggtgctcgccgggcgcggtgtgggggtg
gatgatgccctggcgttccttgatcccaccgttcgctccctgatgcccgacccgcatgtg
ctgaccgattgcgagaaggccgccgagcggcttgtgcgcgccattgaagcgggtgagaag
gtggcgatcttcggtgattacgatgtcgatggcgctgcttcctccgcgttgatgtaccgg
tttcttgcacatttcgggctgacgcccgagatctacattcccgacagaattttcgagggt
tacgggcctaacccggcggcgatgcagcagctggccgccaatggcgcgacgctgatcgtg
acggtggactgcggatccaccagccatgaatcgctcaaggcggcaaaagaggcacgaacg
gacgttgtggtcatagaccaccatcaggtgggtacggaactgccgccggcggtggcgctg
gtcaatcccaaccgggaggacgatctgtcggggcaggggcatctctgtgccgccggcgtg
gtgttcctcgtgctcgtcgccacgcttcgcgttctcaaggacaggcggcaccgccaggcc
ttcacgctcgatctgctgtcattgctcgacatcgttgcgcttgcgacggtctgcgatgtg
gttcccctgaaagggctgaaccgcgcctatgtggtgaagggcctgattgccgcacgccac
atgaaaaatgccggccttgccgcgctgttcaagaaggcggggctgggcgggcctgtgaca
ccctatcatttcggtttcctgatcggaccccgcatcaacgccggggggcgtattggcgac
gctgcgcttggcagccgattgttgacgatcgatgattcctcgcaggccgaggtgattgcc
gagcggctggacgagctgaaccgcgagcgacaggcgatggaagcggcgatgctggcggag
gccgaagcggaggccctgttcgaatatggcgacggctcgggtgccggtgttatcgtcacc
gcgcgtgaaaactggcatcccggcattgtcggcttgttggcctcgcgcctgaaggatcgc
ttccgccgcccggcttttgccattgccttcgatccctccggcaagggcaccggctccggc
cgttcgatcgccggcttcgacatggggcggatggtgcgcgctgccgtggaggccggcctg
ctggtcaagggcggcggtcacgccatggcggcaggcctcacggttgagcgcgccaatctc
ggcaagctcaggacctttttcgaagaagccgcggcaaagaccgtaaacgagctggtagag
agcagcgtattgaagattgatggcgccatcggcgcttcgggggctacgttgcagcttgtc
gaccagctagaacaggccggtccctatggttccggtcattctcagccgatctttgctgtt
ccggcgcatcgcctgcgtgatgtgcggctggtgggcgcatcccacgtcaagatcacgctg
gaggccatggatggctcacggctggacggaatcgcgttccgcgccgccgaggcgcccctg
ggacagatgctcatgaatgcccgcggacggaatattcacgtcgcgggtactgtgggcgcc
gatctctggcaggggcaaaggcgggttcaactgcgtgttctggacgccgctttcgcgccc
tga
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