Rhizobium sp. Y9: BLX90_06725
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Entry
BLX90_06725 CDS
T11041
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhiy Rhizobium sp. Y9
Pathway
rhiy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhiy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BLX90_06725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhiy03400
]
BLX90_06725
Enzymes [BR:
rhiy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLX90_06725
DNA repair and recombination proteins [BR:
rhiy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BLX90_06725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
SecA_DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AUC09916
LinkDB
All DBs
Position
1:complement(1388289..1391786)
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AA seq
1165 aa
AA seq
DB search
MIAGFDAKLVSSADTPLTIGNVPAGMEALLLAEMARAGTSVAYVMSDGQRIADLEQILGF
VAPDIPVMTLPAWDCLPYDRVSPSADTSARRLAALAGLISHAKKPHPAIVLVTVNAMLQK
MAPRDIIESLGFSARPGNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGT
EEPVRLDFFGDTLESIRTFDPASQRTIGQARSLDLNPMSEVTLTPDTISRFRKNYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYEKLETAFDYLKGFRIVTDHTAREAAKERSKL
VLDYYEARRASGETKGSTQGAPYKPVSPGQLYLNGKDFDTALSAVNAVRLTPFNEQDSEG
RPVATLDAHVGPRWARQPTEGESEERVNVFALAVKHIAERRAKGWKVLITGWSEGSLDRL
LQVLNEHGLEKIKPVTSLKEVEKLGKGEAASAVLSLEAGFETGNLAVIGEQDILGDRMVR
RSKRRKRGADFISEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYADDAKL
FLPVENIDLLSRYGSDAAEATLDKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHA
PELVAPDGLYDEFAARFPYDETEDQLNAIEAVREDLAAGRPMDRLICGDVGFGKTEVALR
AAFLAAMNGVQVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVA
DGKTDIVVGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIP
RTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLA
DLADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTA
NTLIVHRADMFGLAQLYQLRGRVGRSKVRAFAFFTLPVNKVLTTTAERRLKVLQSLDTLG
AGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEQVQDSGWSPQ
ISVGTSVMIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKEVQHLLKI
VYIKSLCRIANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIGKQGSMAKIRPDHSLFLNR
DLPTPEKRLTGAAMIMTQLAELARS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgatagccggattcgatgcaaagctggtgtcgtcggccgatacgccgctgaccatcgga
aacgtgcccgcaggcatggaggcgctgctgcttgccgagatggcgcgcgcaggcacctcg
gttgcctatgtgatgtcggatggccagcgcatcgccgatctcgaacaaattctaggtttt
gttgcgcccgatattccggtcatgacgctgccggcctgggactgccttccctatgaccgc
gtgtcaccgagcgccgacacgtcggcgcgtcgcctggcggcgcttgccggtctcatcagc
cacgcgaagaaaccgcatccggccatcgtgctggtcaccgtcaacgcgatgctgcagaag
atggcgccgcgcgacatcatcgaaagccttggcttctccgcgagacccggcaaccagatt
cgcatggaggatattgccgcgcggctggagcgcaacggtttcgaccgggttgcgacggtg
cgtgaggtgggcgagttcgccgtgcgcggcggtattctcgatgttttcgtgccgggcacc
gaggagcctgtgcggctcgatttcttcggcgatacgctggagagcatccgtaccttcgat
ccggccagccagcggaccatcggccaggcgcgctcgctcgatctgaacccgatgagtgaa
gtgacgctgacgcccgatacgatcagccggtttcgtaagaattatctctcgctgttcggt
gcggcgacgcgcgacgatgcgctttatcaggccgtttccgagggccgccgttatgccggc
atggagcactggctgccgctgttttacgagaagctggagaccgccttcgattatctgaag
gggttccgcatcgtcaccgatcacacggcacgcgaggcggccaaggagcgctccaagctg
gtgctcgattattacgaggcgcggcgtgcttccggcgagacgaagggatcgacgcagggt
gcgccctacaagcccgtgtctcccggccagctttatctcaacggcaaggatttcgacacg
gccctgtctgccgtcaatgccgtgcgtctgacgcccttcaatgagcaggatagcgaggga
agacccgtcgccacgctggacgcgcatgtcggcccgcgctgggcgcggcagccaaccgaa
ggcgaaagcgaagagcgggtcaatgtctttgccctggctgtgaaacacatagccgagcgc
cgcgccaagggctggaaggtgctgataacaggctggtcggaaggctcgctcgaccggttg
ctgcaggtgctgaacgaacacgggcttgagaagatcaagccggttacctcgctaaaagag
gtggagaagcttggcaaaggcgaggcggcctcggcggtgctgagccttgaggccggtttc
gaaaccggaaatcttgccgttatcggcgagcaggacattctcggcgaccgcatggtgcgg
cgctccaagcgccgcaaacgcggtgcggatttcatttcggaagtggccggtctggacgag
ggctcgctcgtcgttcatgccgaacacggcattggtcgttttgtcggcctgcagaccatc
gaggcggcgggcgcaccgcgcgcctgtctcgaactgcactatgccgatgatgccaagctg
tttttgccggttgaaaacatcgatctcctctcgcgttacggctcggacgcggcagaggca
acgctcgacaagctcggcggcggcgcatggcagatgcgcaaggccaagctcaagaagcgc
ctgctcgacatggccgatgagcttatccgcatcgcagcggcgcgtctcgtgcgccatgcg
ccggagcttgtcgcgcccgatgggctctatgatgagtttgctgcccgtttcccttatgat
gaaactgaggaccagctgaacgccatcgaggcggtgcgggaggacctcgcggccggccgg
ccgatggaccgtctcatctgcggcgacgttggcttcggcaagaccgaagtggcgctgcgc
gccgccttccttgccgccatgaatggcgtgcaggtggctgttgtggtgccgaccacgctg
ctcgcccgccagcatttccggactttctcggagcgtttccgcgggttgcccatccgcgtg
cagcaggcttcccgtctcgtcggctccaaggaactggcgctgaccaaaaaggaagttgcc
gatggcaagaccgatatcgtcgtcggcacgcatgcgctgctcggtgcgggcatcagcttt
gccaatctcggcctgctcatcatcgatgaggagcagcatttcggcgtcaagcacaaggag
cggctgaaggagctgaaaagcgatgtgcatgtgctgacgctatcggcgacgcccattccg
cgcaccttgcagctcgctatgaccggggttcgcgaactgtcgctcatcaccacgccgcct
gtcgaccgcatggcggtgcgcaccttcatttcgccatttgacccgctcgtcattcgcgag
acgctgatgcgtgagcattatcgtggcggccagagtttctacgtttgcccgcggcttgcc
gatctcgccgatatccatgccttcctgcaatcggatgtgccggaactgaaggtggcggtg
gcgcatgggcagatggcggcgggcgagctggaagacatcatgaacgccttctacgacggc
aaatatgatgttctgctgtcgaccaccatcgtcgaatccggcctcgacgtgccgaccgcc
aatacgctgatcgtgcatcgcgccgatatgttcggtcttgcccagctttaccagctgcgt
ggccgtgtaggccgctccaaggtgcgcgccttcgcgttcttcaccctgccggtcaacaag
gtgctgaccacgactgccgagcgccggctgaaggtgctgcaatcgctcgatacgctcggc
gccggtttccagctagcaagccacgatcttgatattcgtggtgcgggcaatctactcggg
gaagaacagtccggccatatcaaggaagtcggcttcgagctttatcagcagatgctggaa
gaggctgtcgccgaagtgaagggtgacgagcaggtgcaggatagcggctggtcgccgcag
atttcggtcggcacatccgtcatgatcccggaagattacgttcccgatctgcatcttcgc
atgggcctttaccgccggcttggcgagcttgccgatatcagcgagatcgacggtttcggc
gctgaaatgatcgaccgtttcggcccgctgccgaaagaagtgcagcatcttctcaagatc
gtctacattaagtcgctctgccgcattgctaatgtcgagaagctggatgccgggccgaag
ggcgttgtcgttcaattccgcaacaaggaattcccgaacccggcggcgcttgtcggttac
attggcaagcagggatcgatggcgaagatccgtcccgatcacagccttttcctcaaccgc
gatctgccgacgccggaaaagcggctgacgggtgcggcgatgatcatgacgcagttggcg
gagctggctcggtcgtag
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