Rhizobium sp. Y9: BLX90_07520
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Entry
BLX90_07520 CDS
T11041
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhiy Rhizobium sp. Y9
Pathway
rhiy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhiy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BLX90_07520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhiy03021
]
BLX90_07520
03400 DNA repair and recombination proteins [BR:
rhiy03400
]
BLX90_07520
Enzymes [BR:
rhiy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BLX90_07520
Transcription machinery [BR:
rhiy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BLX90_07520
DNA repair and recombination proteins [BR:
rhiy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BLX90_07520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AUC10059
LinkDB
All DBs
Position
1:complement(1536027..1540235)
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKQNQLLSEEEYMIAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRAELAETTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGHPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDIGELHHALE
NKVVTLHAKIRGRFKTVDADGKPVSKIHETTPGRMLIGELLPKNVNVPFDVCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPDSKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDPETGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVNSRDCGTDKGLTMTAIVDAGQVVASLGARILGRT
ALDDIDNPVTGENIVKAGTLIDEADVAAIEKAGIQSVRIRSALTCEVQVGVCGVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANVVDQSFLEASYEGTIQIKNRN
ILRNSEGVLIAMGRNMSVTILDERGAERSTQRVAYGSKIFVDDGDKVKRGQRLAEWDPYT
RPMMTEVEGTVHFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
AVAKLARGGEARFQLSVDAILSVEPGAKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSQYIVGDNVDRIELDDNNDRLIEEGKKPAYGEPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDDLILEERRK
GTGAGSANQMLQDMTDQAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatcctcaggtgcctgcgcagcatttcgattcc
atccggatttcgatcgcttcgccggaaaaaatcctgtcgtggtcctacggcgagatcaag
aagccggaaaccatcaactaccgtacgttcaagccagagcgtgacggtcttttctgcgct
cgcatcttcggaccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgcagcgccggttgcccacatctggttcctgaagtcg
cttccttcgcgtatctcgaccctgctcgacatgacgctgaaggatgtcgagcgcgttctc
tattttgagaactacatcgtcaccgaacctggtctcacctcgctcaagcagaaccagctt
ctgtctgaagaagagtacatgatcgccgtcgacgagttcggcgaagaccagttcaccgcc
atgattggcgctgaagccatctatgagatgctggcttcgatgaacctcgaaaagatcgcc
ggcgacctgcgtgccgaacttgctgagaccacgtcggatctcaagcagaagaagctgatg
aagcgcctgaagatcgtcgagaacttcatggaatcgggcaaccgtcctgaatggatgatc
atgaaggtcgttccggtcattccgccggacctgcgtccgctggttccgctggatggcggc
cgttttgcgacgtccgacctcaacgatctctatcgccgcgtcatcaaccgtaacaaccgt
ctgaagcgcctgatcgagcttcgtgcgcctggcatcatcatccgcaatgaaaagcgtatg
ttgcaggaatccgtcgatgcgctgttcgacaacggccgtcgcggccgcgtcatcacgggt
gccaacaagcgtccgctgaagtcgctctccgacatgctcaagggcaagcagggccgtttc
cgccagaaccttctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctacgcccgtcttgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggttgaaaaggaaaagcctgaggtttgggatattctcgacgaggtcatccgcgaa
catccggttctcttgaaccgcgcgccgacgctgcaccgtctgggtatccaggctttcgaa
cccatgctggtcgaaggcaaggccatccagctgcacccgctcgtctgcacggccttcaac
gccgacttcgacggtgaccagatggctgttcacgttccgctttcgctggaagcccagctg
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgcatccggcaaacggccacccg
atcatcgttccttcgcaggacatggttctcggcctgtattacctgtcgatcatgaaccag
aacgagccgggcgaaggcatggccttctccgacatcggtgagctgcatcacgcacttgaa
aacaaggtcgtgacgctgcatgccaagatccgtggtcgcttcaagaccgtggatgccgat
ggcaagccggtttcgaagattcatgagacgacccccggccgtatgctgattggcgaactt
ctgccgaagaacgtcaacgtgcctttcgacgtctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcattgtggccagaaagacacggtcatcttc
tgtgaccgcatcatgcagctcggctttgcccatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcattcctgacagcaaggtgaagatcgttggcgacaccgaagctctc
gtgaaggaatacgaacagcagtacaatgacggtctcatcacccagggcgaaaagtacaac
aaggttgtcgacgcctggggcaaggcaaccgaaaaggtcgccgaagagatgatggcacgc
atcaaggctgtcgagttcgatccggaaacgggccgccagaagccgatgaactccatctac
atgatgtctcactcgggtgctcgtggttctccgaaccagatgcgtcagctgggcggcatg
cgcggcctgatggcgaagccatcgggtgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgttaacgagtacttcaactcgacccacggtgcccgtaagggtctc
gcagacaccgccctgaagaccgcgaactcgggttacctgacccgtcgtctcgtcgacgtc
gcgcaggattgcattgtcaactccagggattgcggcaccgacaagggcctcaccatgact
gccatcgttgatgccggtcaggtggttgcttcgctcggcgcgcgtatcctcggtcgtacg
gctctcgatgacatcgacaacccggtcaccggcgagaacatcgtcaaggctggcacgctg
atcgacgaagccgacgtggctgccatcgagaaggctggcatccagtccgttcgcatccgc
tcggcgctcacctgcgaagtgcaggttggtgtctgcggcgtctgctacggtcgtgacctt
gcacgcggtacgcctgtcaacatgggcgaagccgttggcgttatcgccgctcagtcgatc
ggtgaacctggcacgcagctcaccatgcgtacgttccaccttggtggcacggcaaacgtg
gtcgaccagtcgttcctcgaagcgtcttatgaaggcacgatccagatcaagaaccgcaac
atcctgcggaactccgaaggcgttctcatcgccatgggccgtaacatgtccgttacgatc
ctcgatgagcgcggcgcggaacgttccacacagcgtgtggcttacggttcgaagatcttc
gttgatgatggcgacaaggtaaagcgtggccagcgtcttgcagagtgggatccctacacc
cgtccgatgatgacggaagtggaaggtaccgttcacttcgaagacctcgtcgacggtctc
tccgttctggaagcgaccgacgaatccaccggcatcaccaagcgtcaggtcattgactgg
cgctcgacgccgcgcggttcggatctcaagcctgcgatcgtcatcaaggacgcgtccggc
gctgttgcgaagcttgcccgtggtggcgaagcccgcttccagctctcggtcgacgccatc
ctgtcggtcgagccgggtgcgaaggtctcccagggtgacgtgcttgcacgttcgccgctg
gaaagcgccaagacgaaggacatcaccggtggtctgccgcgcgttgcggaactgttcgaa
gcccgtcgtccgaaggatcacgccatcatcgcagagatcgatggtacgattcgcctcggc
cgcgactacaagaacaagcgccgcgtgatgatcgagcctgcggaagacggcgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggaaggcgactatatcgaa
aagggtgaatacatcctcgacggtaacccggcgccgcacgacattctggcgatcaagggc
gtggaggctctggcttcctacctcgtgaacgaaatccaggaagtctaccgtctgcagggc
gttgtgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggttgaa
atcaccgatgctggcgatagccagtacatcgtgggtgacaacgttgatcgcatcgagctc
gatgacaacaatgaccgcctgatcgaagaaggcaagaagcctgcctatggcgagccggtt
ctgctcggcatcaccaaggcttcgctgcagacgccgtccttcatctcggccgcctccttc
caggaaaccaccaaggttctcacggaagctgcgattgccggcaagacggacacgctgcag
ggtctcaaggaaaacgtcatcgtcggccgtctcatcccggccggtaccggcggcaccatg
acgcagatccgccgcatcgccacctcgcgcgacgacctcattctcgaggaacgccgcaag
ggtaccggtgcaggttctgcaaaccagatgctgcaggacatgacggaccaggctccggct
gccgagtaa
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