Rhizobium sp. Y9: BLX90_09200
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Entry
BLX90_09200 CDS
T11041
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rhiy Rhizobium sp. Y9
Pathway
rhiy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhiy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BLX90_09200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhiy03019
]
BLX90_09200
Enzymes [BR:
rhiy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BLX90_09200
Messenger RNA biogenesis [BR:
rhiy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BLX90_09200
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
NAT10_TcmA_helicase
CMS1
Flavi_DEAD
AAA_19
AAA_22
Utp25_C
Cas3-like_C_2
Snf7
Motif
Other DBs
NCBI-ProteinID:
AUC11234
LinkDB
All DBs
Position
1:1897812..1899284
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AA seq
490 aa
AA seq
DB search
MTSFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPI
IEMLMKQADRPANRTCRTLILAPTRELVNQIGENLRAFVKKTPLRINQVVGGASINKQQL
QLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPAK
RQTLLFSATMPKAIADLAHSYLTDPLKVEVTPPGKAADKVEQYVHFVAGKNDKTELLKKS
LNENPDGRAIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVL
VATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHD
IEKLMKIDIPVASGERPAGLASPTRPNNNRGGRNNNGGQQRGPREGGRHNGESRPSRHHA
PRDADNDLEVTSDFKRVKQAEGDAGRPAGPRKHRRPARKPGGSGANRHAPAGGNGQEKRA
SGNGHRGRNR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagttttagcgaactcggcctctccgaaaagattgttgccagcgttacccagctt
ggctacacaaccccgacccccattcaggcaaaagccattccgctgctgctcgaaggccgc
gacctgatcggcctcgcacagaccggtaccggcaagaccgccgctttcggcctgccgatc
atcgaaatgctgatgaagcaggcggaccgcccggcaaaccgcacctgccgcacgctcatc
cttgccccgacccgcgagctggtgaaccagatcggcgaaaacctgcgcgctttcgtgaag
aagacgccgctgcgcatcaaccaggtggttggcggcgcatcgatcaacaagcagcagctc
cagctcgaaaagggcacggacattctggtggcaacccccggccgcctgcttgacctcatc
gcccgcaacgccatctcgctctccaaggtcacctatctggtgctggacgaagcggaccag
atgctcgacctcggcttcatccacgatctgcgcaagatctcgaagatggtgcccgccaag
cgccagacgctgctcttctccgccaccatgccgaaggcgatcgccgatctggcccacagc
tacctgaccgatccgctgaaggtcgaagtgaccccgcccggcaaggcagccgacaaggtg
gagcaatatgtccacttcgtcgccggaaagaacgacaagaccgagcttctgaagaagtct
ctcaacgagaacccggatggccgcgccatcgtgttcctgcgcacaaagcacggtgcggag
aagctctacaagcatctcgaacatatcggtttcaaggtcgcctccatccacggcaacaag
agccagggccagcgcgagcgcgccctgaagggctttaaggacggcgagatcaaggttctg
gtcgcaaccgacgtcgcggcgcgcggcatcgatatcccggccgtgacgcacgtcttcaac
tatgacctgccggaagtaccggacgcttatgtccaccgcatcggccgtaccgcccgtgcc
ggccgcgatggcatcgccattgctttctgcgcaccggacgagacccgcctgttgcacgac
atcgaaaagctgatgaagatcgatattccggttgcttctggtgaacgcccggccggtctt
gccagcccgacgcgccccaacaacaaccgcggcggacgcaataacaatggcggccagcag
cgcggcccgcgcgaaggcggacgccacaacggcgaatcccgcccgtctcgccaccacgcg
ccgcgcgatgcggacaatgatcttgaagtcacctcagacttcaagcgcgtgaagcaggcc
gaaggcgacgcaggccgcccggctggcccgcgcaagcatcgtcgtccggcccgcaagccc
ggcggcagcggcgccaaccgccacgcccctgccggcggcaacggccaggaaaaacgcgct
tccggtaacggccatcgcggccgcaaccgttaa
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