Rhizobium sp. Y9: BLX90_11625
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Entry
BLX90_11625 CDS
T11041
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rhiy Rhizobium sp. Y9
Pathway
rhiy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhiy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BLX90_11625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhiy03021
]
BLX90_11625
03019 Messenger RNA biogenesis [BR:
rhiy03019
]
BLX90_11625
Transcription machinery [BR:
rhiy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BLX90_11625
Messenger RNA biogenesis [BR:
rhiy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BLX90_11625
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
NACHT
DUF6360
AAA
Motif
Other DBs
NCBI-ProteinID:
AUC10799
LinkDB
All DBs
Position
1:complement(2429389..2430645)
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AA seq
418 aa
AA seq
DB search
MKLQELKSKSPTDLLTFAESLEVENASTMRKQELMFAILKVLASQDIEIIGEGVVEVLQD
GFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTIN
FDDPEKIRHKVHFDNLTPLYPNERFKMELDVPTSKDLSSRVIDLVAPLGKGQRGLIVAPP
RTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHV
QVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDI
LKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTMDAIEFLIDKLKQTKNNSDFFESMNT
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttcaggaacttaagagcaaatcgcctaccgacttgctgacttttgccgaatcc
ctggaagttgaaaatgcgagcaccatgcgcaagcaggagctcatgttcgcaatcctcaag
gttctcgcgagccaggacatcgaaatcatcggcgaaggcgtcgttgaagttctgcaggac
ggtttcgggttcctgcgatccgcaaacgcaaactatctgccgggtccggacgatatttac
atctctccctcgcagatccgtcggttttcgctgaagaccggcgatacggttgaaggaccg
atccgcggtcccaaggaaggtgagcgctacttcgcccttctgaaggtcaacacgatcaat
ttcgacgatcccgaaaagatccgccacaaggtccatttcgataatctgacgccgctctat
ccgaacgagcggttcaagatggagcttgatgttccgacatccaaggatctgtcgtcgcgg
gttatcgatctcgtcgcaccgctcggcaagggccagcgtggcttgatcgttgcaccgcca
cgtaccggtaaaacggttctgctacagaacattgcccattcgatcacggcaaatcacccg
gaatgttatctcatcgttcttttgatcgacgagcgtccggaagaagtcaccgacatgcag
cgttcggtcaagggagaggttgtatcctccaccttcgatgaaccagcggtacgccacgta
caggtcgctgaaatggtcatcgaaaaggcgaagcgcctcgttgaacatggccgcgacgtc
gtcattctgctcgattccataacccgtcttggtcgcgcttataacaccgtcgttccctct
tccggcaaggttctgaccggtggtgtggacgccaacgcgctgcagcggccgaagcgcttc
tttggcgccgcccgtaatatcgaagaaggcggctcgctgacgatcattgcgaccgcgctg
atcgacactggcagccgtatggatgaagtcatcttcgaagagttcaagggtacgggtaac
tcggaaatcgtgcttgaccggaaggtagcagacaagcgtatcttcccggcgctggatatt
ctgaaatctggtacccgtaaggaagaccttctggtgccgcgccaggatttgcagaagatt
tttgttcttcgccgtattctcgcgccgatgggaacgatggacgccatcgagttcctcatc
gataagctgaagcagactaaaaacaattcggatttcttcgaatcgatgaacacctga
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