Rhizobium sp. BT03: QMO80_000906
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Entry
QMO80_000906 CDS
T09950
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhiz
Rhizobium sp. BT03
Pathway
rhiz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhiz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QMO80_000906 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhiz03021
]
QMO80_000906 (rpoC)
03400 DNA repair and recombination proteins [BR:
rhiz03400
]
QMO80_000906 (rpoC)
Enzymes [BR:
rhiz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QMO80_000906 (rpoC)
Transcription machinery [BR:
rhiz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QMO80_000906 (rpoC)
DNA repair and recombination proteins [BR:
rhiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QMO80_000906 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
BSH_RND
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WHO71895
LinkDB
All DBs
Position
complement(905937..910145)
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSELADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDLGELHHALE
TKVVTLHTKIRGRFKSVDEDGKPYSKIYETTPGRLLIGELLPKNGKVPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDAKAKIVADTESL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDENTGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTETGLTMTAIVDAGQVVASLGARILGRT
ALDDIDHPVTGERLVDAGKMILEPDVIEIEKAGIQSIRIRSALTCEIQTGVCSVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
ILRNSDGNLVAMGRNMTVQILDERGVERSSQRVAYGSKLHVDEGDKVKRGQRLAEWDPYT
RPMMTEVAGTVQFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
NVAKLSRGGDARFLLSVDAILSVEPGTKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSTYIVGDNVDRIELEDVNDHLIEQGKKPAYGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDELILEERRK
GTGAAVATPMLQDMVEKAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaatttcgattcc
attcggatttcgatcgcgtctccggagaagatcctctcctggtcctacggtgagatcaag
aagccggaaaccatcaactaccgtacgttcaagccggaacgcgacggtttgttctgcgcg
cgcatcttcgggccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtgacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgccgctcccgttgcccatatctggttcctgaagtcg
ctgccgtcgcgcatctcgacgctgctcgacatgacgctgaaggatgtcgagcgcgtcctc
tatttcgaaaactatatcgtcaccgagccgggcctgacggccctgaaggagcaccagctc
ctctcggaagaagagtacatgctcgccgtcgacgaatatggcgaagaccagttcaccgcg
atgatcggcgctgaggcgatctacgagatgctggcctcgatgaacctcgaaaagatcgcc
ggcgacctgcgctccgagcttgccgacaccacgtcggatctcaagcagaagaagctgatg
aagcgcctgaagatcgtcgagaacttcatggagtcgggcaatcgtccggaatggatgatc
atgaaggtcgttccggtcattccgccggacctgcgtccgctggttccgctcgacggcggc
cgtttcgcgacgtcggacctgaacgatctctaccgccgcgtcatcaaccgtaacaaccgt
ctgaagcgcctcatcgagcttcgtgcgcccggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatcggttgacgcgctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaaacagggccgcttc
cgccagaacctgctcggcaagcgtgtcgactattccggccgttcggtcatcgttaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgcttgagctcttcaag
ccgttcatctacgcccgcctcgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggtcgaaaaggaaaagcccgaggtctgggatatcctcgacgaggtcatccgcgag
catccggttctcttgaaccgcgcgccgacgctgcaccgcctgggcatccaggccttcgaa
cccaccctggtcgaaggcaaggcgatccagctgcacccgctcgtctgcacggccttcaac
gccgacttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctc
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcatccggccaacggcgcgccg
atcatcgttccctcgcaggacatggttctcggcctctattacctgtcgatcctgaaccag
aacgaaccgggcgaaggcatggccttctccgacctcggcgagctgcatcacgccctcgaa
accaaggtcgtgacgctgcacaccaagatccgcggccgcttcaagtcggtcgacgaggat
ggcaagccctattcgaagatctatgagacgacgcctggccgtctgctcatcggcgaactg
ctgccgaagaacggcaaggtgcccttcgacatctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgccattgcggccagaaggacacggtcatcttc
tgcgaccgcatcatgcagctcggcttctcccatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcattccggatgccaaggccaagatcgttgccgacaccgaaagcctg
gtgaaggaatacgagcagcagtacaatgacggcctgatcacccagggcgaaaagtacaat
aaggttgtcgacgcctggggcaaggccaccgaaaaggtcgccgaagaaatgatggcccgc
atcaaggcggtcgaattcgacgagaacaccggccgtcagaagccgatgaactcgatctac
atgatgagccattccggcgcccgcggttctccgaaccagatgcgccagctaggcggcatg
cgcggcctgatggccaagccgtcgggtgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgtcaacgagtacttcaactcgacgcacggcgcccgtaagggtcta
gcagacaccgccttgaagaccgccaactcgggttacctgacccgccgtctcgtcgacgtc
gcgcaggattgcatcgtcacgcacgtcgattgcggcaccgaaaccggcctcaccatgacc
gccatcgtcgatgccggtcaggtcgtcgcctcgctcggcgcccgcatcctcggccgcacg
gcgctcgacgatatcgatcatccggtcacgggtgagcgcctcgtcgatgccggcaagatg
atcctcgagcccgatgtcatcgagatcgagaaagccggtatccagtcgatccgcatccgc
tcggcgctgacctgcgaaatccagacgggcgtctgctcggtctgctacggccgcgacctg
gcccgtggtacgcctgtcaacatgggcgaagccgtcggcgtcatcgctgctcagtcgatc
ggcgagccgggcacccagctcaccatgcgtaccttccaccttggcggtacggcaaccgtg
gtcgaccagtcgttcctggaagcctcgtacgaaggtacggtgcagatcaagaaccgcaac
atcctgcgcaactccgatggcaacctcgttgccatgggccgcaacatgaccgtccagatc
ctggacgagcgtggtgtggagcgctcctcgcagcgtgtcgcctacggttcgaagctgcat
gtcgacgaaggcgacaaggtcaagcgcggccagcgtctggcggagtgggatccctacacc
cgtccgatgatgaccgaagtggctggcaccgttcagttcgaagacctggtcgacggtctc
tcggttctggaagcgaccgacgaatccaccggcatcaccaagcgtcaggtcatcgactgg
cgttcgaccccgcgcggttcggacctcaagccggcgatcgtcatcaaggatgccagcggc
aatgtcgccaagctgtcgcgtggcggcgacgcccgcttcctgctctcggtcgacgccatt
ctgtcggtcgagccgggcaccaaggtctctcagggtgacgttcttgcgcgttcgccgctg
gaaagcgccaagacaaaggacatcaccggcggtctgccgcgtgttgccgagctcttcgaa
gcccgccgtccgaaggaccacgccatcatcgcagagatcgatggtacgatccgcctcggc
cgcgactacaagaacaagcgccgcgtcatcatcgagccggcggaagacggtgtcgagcct
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggaaggcgactatatcgaa
aagggtgactacatcctcgacggtaacccggctccgcacgacatcctggcgatcaagggc
gtagaggctctggcctcttacctcgtcaacgagatccaggaagtctaccgcttgcagggt
gttgtcatcaacgacaagcacatcgaggtgatcgtccgtcagatgctgcagaaggtggaa
atcaccgatgcaggcgactcgacctatatcgtcggcgacaatgtcgaccggatcgagctc
gaagacgtcaacgatcacctgatcgagcagggcaagaagcccgcctacggcgatccggtt
cttctcggcatcaccaaggcgtcgttgcagactccgtccttcatctcggccgcatccttc
caggaaacgaccaaggtgctgacggaagctgcgatcgccggcaagaccgacggcctgcag
ggtctgaaggaaaacgtcatcgtcggccgtctcatcccggccggcaccggcggcaccatg
acccagatccgccgcatcgccacgtcgcgcgacgagctgatcctcgaggagcgccgcaag
ggcacgggtgctgccgttgccacgccgatgctgcaggacatggtcgaaaaggctccggct
gcggaataa
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