Rhizobium sp. BT03: QMO80_000934
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Entry
QMO80_000934 CDS
T09950
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhiz
Rhizobium sp. BT03
Pathway
rhiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QMO80_000934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhiz03019
]
QMO80_000934
03009 Ribosome biogenesis [BR:
rhiz03009
]
QMO80_000934
Enzymes [BR:
rhiz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QMO80_000934
Messenger RNA biogenesis [BR:
rhiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QMO80_000934
Ribosome biogenesis [BR:
rhiz03009
]
Prokaryotic type
rRNA processing factors
QMO80_000934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WHO71919
LinkDB
All DBs
Position
934130..937012
Genome browser
AA seq
960 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSKQDQP
DVGIVPAEAPETAAVTEEPAAVEAAASPEAAEEAPAKKARPRRSRKKAAEPAAETTATED
AVPTDVEAEGASGVDNEDDGSTGGTMAAMVETDSISEDVDTSKRRHDDDDDDDDHGEEEV
IESVGAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLA
GRYSVLMPNTARGGGISRKITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKR
DFEYLMRLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEDGYREAKD
FMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSID
VNSGRSTREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKL
KECLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHV
LRGIEEYLLKNTTHNISVRTTPDIALYLLNHKRQTIIDYENRFGVAIVIDADGSVGAQHF
AIDRGEAVENPVKIETLFNFAAIPEDDDDDIVIEMDEDEDEEIEEKPAAAERPVAARSEG
EGDGNRKRKRRRRRRGRNGNAEQPASTAGEAGDEDEDGDDEGGEGDENTEGTPETLAESE
ESQRRKRRRRGKRGGRRNRAEDGSELTAGEAGEDNGAEEGEGDVSNDGAPGEAETVEAVA
EQAGESQAAAAAVEAAAVVTEDVKPARGRGRRKAAAAPVEEPVVEAAPVAEAEPELVEAS
ADLETPAQEEAQEETKPVRANRESNITSSEPTVKSTRSENGESDDGKPKKAGWWQRRGFF
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgcttatcgatgcgtctcacgaggaagagacgcgcgtcgttgtcgtt
cgcgggaaccgcatagaagaatttgacttcgagtcccagcacaagaagcagatccgcggc
aacatctatctggcaaaggtaacgagggtcgagccctcgctgcaggccgctttcgtcgac
tacggcggcaaccggcacggcttcctggccttcgccgaaatccatcccgactattatcag
ataccgcttgccgaccgtcaggcgctgcttcgggccgaagccgaggagcatcgccgcgac
gaagacgtcgagcatgtcgaaaccgcgccgatggtcgatctttccaagcaggatcagccg
gatgtcggcatcgttccggctgaggcgccggaaacggctgccgtgacggaagagccggca
gcggtagaggcagcggcatcgcccgaggccgctgaggaagcgccggccaagaaggccaga
ccgcgccgcagccgcaagaaggcagccgagccggctgccgagacgacggcgaccgaggac
gccgttcccactgatgtcgaggccgaaggcgcttcgggcgtcgacaacgaggatgacggc
tcgaccggcggcacgatggccgccatggtggaaacagactcgatctccgaggacgtcgat
accagcaagcgtcgccacgatgatgacgacgacgatgacgatcacggcgaagaggaagtc
atcgaatccgtcggcgccgaagacgcgatggaagaagtgccggaccgcgtgcagcgcaag
ccgcgcaaacagtaccgcatccaggaagtcatcaagcgccgccagatcctgctcgtgcag
gtcgccaaggaagagcgcggcaacaagggcgcggcgctaaccacctatctgtcgcttgcc
ggccgctattccgtgctgatgccgaacacggcgcgcggcggcggcatttcccgcaagatc
accaatcctgccgaccgcaagcgcctgaaggaaatcgcgcgcatgctcgaagtgccgcag
ggcatgggcgtcatcctgcgcaccgccggcgccaaccgcaccaaggtcgaggtcaagcgc
gacttcgaatatctgatgcgcctgtgggagaacgtgcgcacgctgacgctggcgtccacc
gcgccctgcctcgtctatgaggaaggctcgctgatcaagcgctcgatccgcgacctctat
aacaaggatatcggcgagatcatcgttgccggcgaagacggctatcgtgaagccaaagac
ttcatgaagatgctgatgccgagccatgccaaggtggttcagccctatcgcgacatccac
ccgatcttttcgcgctccggcatcgaagcccagctcgaccgcatgctgcagccgcaggtg
acgctgcgttccggcggctacctgatcatgaaccagacggaagcgctggtttcgatcgac
gtcaactccggccgctcgacgcgcgaacactcgatcgaggacaccgcgctgcagaccaac
ctcgaagccgctgaggaaatcgcccgccagcttcgcctgcgcgaccttgccggcctgatc
gtcatcgacttcatcgacatggaagaaaagcgcaacaaccgcgccgtcgagaagaagctg
aaggaatgcctgaagaacgatcgcgcccgcatccaggtcggccggatctcgcatttcggc
ctgctcgaaatgtcgcgccagcgtatccgcgcctcggttctcgaatcgacgacgcaggtc
tgctcgcattgcggcggcagcggccatgtgcgttcgcagtcctccgtcgcgctgcatgtc
ctgcgcggtatcgaggaatatctgctcaagaataccacgcacaacatcagcgtacgcacc
acgcctgacattgcgctctacctgctcaaccacaagcgccagacgattatcgactacgaa
aaccgtttcggcgtcgctatcgtcatcgatgcggatggttcggtcggcgcgcagcatttc
gccatcgatcgcggcgaggccgtggaaaacccggtcaagatcgagacgctcttcaacttc
gcagccattcccgaggatgacgacgacgacatcgtcatcgaaatggatgaggacgaagac
gaggagatcgaggaaaagccggccgccgccgagcgccccgttgcggcgcgctcggaaggc
gaaggtgacggcaaccgcaagcgcaagcgccgccggcgccggcgcggtcgcaacggcaat
gccgagcagccggcatcgacggctggcgaagctggcgacgaggatgaagacggcgacgac
gagggcggcgaaggtgatgaaaacaccgaaggcacgcccgagacgctggctgaaagcgaa
gaatcgcagcgccgcaagcgccgccgtcgcggcaagcgcggcggtcgccgcaaccgcgcc
gaggatggttccgaactgacggccggcgaagccggtgaagacaatggcgctgaagagggc
gaaggcgacgtttcgaacgatggcgctcccggggaagccgaaactgtcgaagcggtagcc
gagcaggctggcgaaagccaggccgcagccgccgctgtcgaggctgcggcggtcgtcacc
gaggatgtcaagcccgcccgtggccgcggccgccgcaaagccgcagcagcgccggtcgag
gagcccgtggtagaagcggctcctgtcgccgaagccgagccggaactggtcgaggcctcc
gccgatctcgaaacgcccgcccaggaagaagcgcaggaagagacgaagccggttcgcgcc
aaccgcgaatccaacatcacctcctccgagccgacggtgaaatccacccgcagcgaaaat
ggcgaaagcgacgacggcaagccgaagaaagccggctggtggcagcgccgtggcttcttt
tga
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