Rhizobium sp. BT03: QMO80_000942
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Entry
QMO80_000942 CDS
T09950
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rhiz
Rhizobium sp. BT03
Pathway
rhiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QMO80_000942 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhiz03019
]
QMO80_000942 (rnr)
03016 Transfer RNA biogenesis [BR:
rhiz03016
]
QMO80_000942 (rnr)
Enzymes [BR:
rhiz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QMO80_000942 (rnr)
Messenger RNA biogenesis [BR:
rhiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QMO80_000942 (rnr)
Transfer RNA biogenesis [BR:
rhiz03016
]
Prokaryotic type
tRNA degradation factors
QMO80_000942 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
WHO71927
LinkDB
All DBs
Position
946377..948749
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AA seq
790 aa
AA seq
DB search
MSRIPRDRTNPAGKRPGKIGRAGKDAPAVEPLNIVHGALPSREVILRFIADHPQKASKRE
LAKAFGLKGDNRVELKHMLQELEQEGMLQKNRKSLIRPGALPPVTVLDITTRDKDGDLIG
RPAEWPEDQGVAPAVAIRQQSPAGRQGKSKAPVAGLGDRILAKIFPAVDRGGPAYTARII
KVIDKRRGASMGVFRAAPGGGGRLLPIERRGEEMVIDPDFTGGAADGDLVEIEVARLGRF
GLPRAKVLSVVGSVGSEKAISMIAIHAHGIPHIFPPAVIAEAEEAKPATMSHREDWRDVP
LITIDPADAKDHDDAVYAELDPSPDNPGGVIVTVAIADVSWYVRPKSQLDREALKRGNSV
YFPDRVVPMLPERISNDLCSLKEGVDRPALAVRMSFSGEGRKIGHTFHRIMMKSAAKLSY
QQAQAAIDGKPDDKTGPMLESILKPLWHAYEVMKRGRDRRQPLELDMPERKILLKPDGTV
DRVHVPPRLDAHKLIEEMMIQANVAAAETLEKKRQPLIYRIHDGPTLAKQEILREFLATL
GIPLAKGGNMRANNFNGILAKADGTPHQTMVNEMVLRSQSQAIYGPENIGHFGLNLMKYA
HFTSPIRRYADLIVHRALVGSLGFGDGGITTEEEAVLDDIAAEISTFERRAMAAERETVD
RLIAHHLSGRVGEEFAGRVSGVTKSGLFIALPDYGADGFVPISTLGSDYYIYDEAHQALS
GERTGLGYRLGDNVTVKLAEAIPLAGALRFEMISEGREMPTAARSFHKAGRRDRGQVRKK
PGTRPPRGRR
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagaataccgcgcgacagaacgaaccctgcgggcaagcgcccgggcaagatcggc
cgtgccggcaaggatgctccggccgtcgagccgctgaacatcgtccacggcgcgctgccc
tcgcgcgaggtgatcctgcgcttcatcgccgatcatccgcagaaagcttccaagcgtgaa
ctcgccaaggctttcggcctgaagggcgacaatcgcgtcgaactcaagcacatgctgcag
gagctcgagcaggaaggcatgctgcagaagaaccgcaagtcgctgatccgtcccggtgca
ctgccgccggtcaccgttctcgatatcaccacgcgcgacaaggacggcgatctgatcggc
cggccggcggaatggcccgaggatcagggtgtcgcacccgccgtcgcaatccgccagcaa
tcgcctgccggccgccagggcaagagcaaggcgcccgtcgccggcctcggcgaccgcatt
ctggcaaagatcttcccggccgtcgatcgcggcgggccggcctatacggcccggatcatc
aaggtgatcgacaagcgccgtggcgcctcgatgggcgttttccgcgccgcaccgggcggt
ggcggccggctgctgccgatcgagcggcgcggcgaggagatggtgatcgatccagacttc
accggtggtgctgcggacggcgacctggtcgagatcgaagtcgcccgcctcggccgcttc
ggcctgccgcgcgccaaggtgctttccgtcgtcggttcggtcggctcggaaaaggcgatc
tcgatgatcgccatccatgcgcatggcattccgcatatcttcccgcccgccgttatcgcc
gaggcggaggaagcaaagcccgccacgatgtcgcatcgcgaggactggcgcgacgtgccg
ctgatcaccatcgatccggccgatgccaaggaccacgacgacgccgtctacgccgaactc
gacccctcgcccgacaatcccggcggcgtcatcgtcaccgtggcgattgccgacgtctcc
tggtatgtccgccccaagtcacagctcgaccgtgaggcgctgaagcgcggcaactcggtc
tatttcccggatcgcgtcgtgccgatgctgccggagcgcatctccaacgatctctgctcg
ctgaaggaaggcgtcgaccggccggcgcttgccgtgcgcatgagcttctccggcgaaggc
cgcaagatcggccatacctttcatcgcatcatgatgaagagcgcggccaagctctcctac
cagcaggcgcaggcggcgatcgacggcaagccggacgataagaccgggccgatgctcgag
tcgatcctgaagccgctctggcacgcctatgaggtgatgaagcgcggccgcgaccggcgc
cagccgctggaactcgacatgccggagcgcaagatcctgctgaaacccgacggcaccgtc
gaccgggtccacgtgccgccgcggctcgacgcgcacaagctgatcgaggagatgatgatc
caggcgaacgtcgcagccgccgagaccctggaaaagaaacgccagccgctgatctaccgc
atccatgacggcccgacgcttgccaagcaggaaatcctgcgcgagttcctggcgacgctc
ggcatcccgcttgccaagggcggcaacatgcgcgccaacaatttcaacggcattctggcg
aaggcggacggcacgccgcaccagaccatggtcaacgagatggtgctgcggtcgcagagc
caggcgatctacgggccggagaatatcggccatttcggcctcaatctgatgaaatacgcg
catttcacctcgccgatccgccgttacgccgacctcatcgtgcatcgcgccctcgtcggc
tcgctcggcttcggcgacggcggcatcacgactgaggaagaggctgttctcgacgatatc
gccgccgaaatctcgaccttcgagcgccgggcgatggcagccgagcgcgagacggtcgac
cggctgatcgcgcatcatctcagcggccgcgtcggcgaggaatttgccgggcgggtctcg
ggcgttacgaaatccgggctttttatcgccctgccggactatggcgccgacggtttcgtc
cccatatcgacgctcggaagcgattattacatctatgacgaggcgcatcaggcgctctcg
ggtgaaaggaccgggctcggctatcgcctcggcgacaacgtcacggtgaagcttgccgaa
gcgatcccgcttgccggcgcgctgcgcttcgagatgatcagcgagggccgcgagatgccg
acggcggcgcgctccttccacaaagcgggccgccgcgacaggggccaggtccgcaagaag
cccggaacgagaccgccgcgcgggcggcgttag
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