Rhizobium sp. BT03: QMO80_000953
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Entry
QMO80_000953 CDS
T09950
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhiz
Rhizobium sp. BT03
Pathway
rhiz03030
DNA replication
rhiz03430
Mismatch repair
rhiz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QMO80_000953 (dnaE)
03430 Mismatch repair
QMO80_000953 (dnaE)
03440 Homologous recombination
QMO80_000953 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhiz03032
]
QMO80_000953 (dnaE)
03400 DNA repair and recombination proteins [BR:
rhiz03400
]
QMO80_000953 (dnaE)
Enzymes [BR:
rhiz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QMO80_000953 (dnaE)
DNA replication proteins [BR:
rhiz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QMO80_000953 (dnaE)
DNA repair and recombination proteins [BR:
rhiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QMO80_000953 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
WHO71938
LinkDB
All DBs
Position
complement(958133..961630)
Genome browser
AA seq
1165 aa
AA seq
DB search
MADTAKGSTGEAIGGTPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNL
FIALEFSQKAMDEGLQPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATDAGYER
LVDLVSRAYLGGESNQAIHIRASWLEEAGTEGLIALTGALTGPVDAAIREGHPAQAEARL
LALKRLFGDRLYVELQRHGTYDKRHEQKIVGLAYSNDLPLVATNEAFFPTRDDYDAHDAL
MAVAHNAIVSDDSRFRLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFVLKTRKPI
LPRFTGATDDAEEAERAEASELRRQAVEGLDMRLATLGMSPGYEEKDYRERLDFELSVIE
RMRFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDF
VAKRGINVDLAAIPLDDKPTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVA
LYRPGPMENIPTYNARKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKAEMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHF
QTGDNRIYYALAALKGVGESAVDHIVEVRGDKPFAGIEDFCLRIDPRQVNRRVLESLIFA
GAFDCFGTDRAQLSAGLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLA
SERLLKEFQVLGFYLTAHPLDSYSNILQKMRVQTFAEFSQAIKQGAFNARLAGTVISKQE
RKTRTGNKMGIIVFSDSSGQFEAVLFSEMLNQYRDVLESGKSFVLTATGEERPEGIGLRI
QTIQSLEEKSLQMQKALRVYIRDSGPLRMVAGHLNAKGDGLVSFIVIKEDGKREVEVALA
EKYRITPEIAAALRAAPGVVDVELV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcggatacggcaaagggttccacgggtgaggcgatcggcggcacgccgggcttcatc
cacctgagggtccattccgcctattcgcttctcgaaggcgccttgccgctgaagaagatc
ctttacaaggcgaccggcgacagccagccggcgatcgccatcaccgataccaacaatctg
ttcatcgcgctggaattctcccagaaggcgatggatgagggcctgcagccgatcatcggc
tgccaggtctcgatcgacatggaagatgggctggaaacggaaaagcgcggcggccagcag
gcgctggtcaagctgccgtcgatcgttcttctcgccgccacggatgccggttacgaacgg
ctcgtcgatctcgtcagccgcgcctatctcggcggtgaaagcaaccaggctatccatatc
cgtgcctcctggctggaggaggccggcacggaagggctgatcgccctgaccggcgccctg
accgggcccgtcgacgcggcgatccgggagggccatcccgcgcaggcggaggcccggctg
ctggcgctgaaacgtctcttcggcgacaggctctatgtcgaattgcagcggcacggcacc
tacgacaaacgtcacgagcagaagatcgtcgggctcgcctacagcaacgacctgccgctg
gttgcgaccaacgaggccttctttccgacgcgtgacgattacgacgcccatgacgcgctg
atggcggtcgcccacaatgccatcgtctccgacgacagccgctttcgcctgaccccggac
cattatctgaagagccgggccgagatggccaagctcttcgccgatctgcccgaagcgctg
gagaacacgatcgagatcgccaggcgctgctccttcgtgctgaagacccgaaagccgatc
ctgccgcgcttcaccggtgcgaccgacgacgccgaggaggccgagcgcgccgaggcgagc
gagttgcgccgccaggcggtcgaagggctggacatgcggcttgcaacgctcggcatgtcg
ccgggctacgaggaaaaggattatcgcgagcggctggatttcgaactcagcgtcatcgag
cgcatgcgttttcccggttacttcctgatcgttgccgacttcatcaaatgggccaagcag
cacgacattccggtcggccctggccgcggttcgggcgccggttcgctggttgcctacgct
ttgacgatcaccgacgtcgatccgctgcggttttcgctgctcttcgaacgcttcctcaac
ccggaacgcgtctcgatgccggacttcgacatcgacttctgccaggaccgccgcgaagag
gtgatccgctacgtccaggccaaatatggccgcgagcaggtggcccagatcatcaccttc
ggttcgctgcaggcacgcgccgcccttcgcgacgtcggccgcgtgctggagatgccgtac
ggccaggtcgacaagatctgcaagctggtgccgaacaatccggccaatccgacgccgctc
tccaaagcgatcgaggaggagccgaagctgcaggaagaggcggcgaaggaaccggtcgtt
gcgcgcctgctcgacatcgcccagaagatcgaggggctttaccgccatgcctcgacgcat
gccgccggcatcgtcatcggcgaccgcccgctttccaagctggtgccgatgtatcgcgat
ccgcgctccgacatgccggtcacccagttcaacatgaagtgggtggagcaggccggcctc
gtcaaattcgactttctcggcctgaagacgctgacggtgctgaaggtcgcggtcgatttc
gtcgccaaacgcggcatcaatgtcgatctcgccgccattcctctcgacgacaaacccacc
tacgagatgctgtcgcgcggcgagacggtcggcgtgttccaggtggaaagtgccggcatg
cgcaaggcgctgatcggcatgaagccggactgtatcgaggatatcatcgcgctggtggcg
ctctaccgcccgggcccgatggagaacatcccgacctacaatgcccgcaagcatggtgac
gaggagctggagtcgatccatccgatgatcgaccacctgctcaaggaaacccagggcgtt
atcgtctatcaggagcaggtgatgcagatcgcccaggtcctgtccggctattcacttggt
gaagccgaccttctgcgccgcgccatgggcaagaagatcaaggccgagatggaccagcag
cgcgaacgcttcgtcgtcggcgccgtcaagaacggcgtctcgaagccgcaggccgacaat
atcttcgaactgctggcgaagttcgccaattacggcttcaacaagtcgcatgccgccgcc
tacgccatcgtctcctaccagacggcctacatgaaggcgcattatccggtcgaattcctc
gccgcctcgatgacgctcgacatgtccaacacggaaaaggtcaacgatttccgccaggat
gccaagcgcctcggcatcgaggtgatcgccccttcggtgcagacctccttccgccatttc
cagaccggcgacaaccgcatctactacgcgctcgccgccctcaagggcgtcggcgaatcc
gccgtcgaccatatcgtcgaggtgcgcggcgacaagccctttgccggtatcgaggatttc
tgcctgcgcatcgatccgcgccaggtcaatcgccgcgtgctcgaaagcctgatctttgcc
ggcgccttcgattgtttcggcaccgaccgcgcccagctttcagccggcctcgaccgtatc
ctcggttatgcccagcgcgcccaggagaacaagctgagcggccagtcggacatattcggc
agcactctgacctcggggcctgaaaaaatttccctgccgccgttttcgccctggcttgcc
tccgagcggctgctcaaggagttccaggtgctgggcttctacctcaccgcccatccgctc
gattcctacagcaacatcctgcagaagatgcgggtgcagacctttgccgaattttcccag
gcgatcaaacagggcgccttcaatgcgcgcctcgccggcaccgtcatttcgaagcaggag
cgcaagacccgcaccggcaacaagatgggcatcatcgtcttttccgattcctccggccag
ttcgaggcggtgctgttttcggaaatgctcaaccagtatcgcgacgtactggagtcggga
aaatccttcgtgctgaccgcgacgggggaggagcggccggagggcatcggcctgcgcatc
cagacgatccagtcgctggaggaaaaatcgctgcagatgcagaaggcgctgcgcgtctat
atcagagattccgggccgctgagaatggtcgccggccacctcaacgccaagggcgacggc
ctcgtttccttcatcgtcatcaaggaggatggcaaacgcgaggtggaagtggcgctggcg
gagaaataccgcatcacgccggagatcgccgccgcgcttcgcgccgcccctggcgtcgtc
gatgtcgagcttgtctag
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