Rhizobium sp. BT03: QMO80_003734
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Entry
QMO80_003734 CDS
T09950
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rhiz
Rhizobium sp. BT03
Pathway
rhiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QMO80_003734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhiz03019
]
QMO80_003734
Enzymes [BR:
rhiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QMO80_003734
Messenger RNA biogenesis [BR:
rhiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QMO80_003734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
HEM4
AAA_19
Flavi_DEAD
AAA_22
Snf7
Motif
Other DBs
NCBI-ProteinID:
WHO74655
LinkDB
All DBs
Position
complement(3845126..3846814)
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AA seq
562 aa
AA seq
DB search
MVRSGDSRCGAPKGYALTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLQGRDLIG
LAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIADNLKKFIRKSHL
RVNVVVGGVSINKQQLQLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDL
GFVHDLRKIAKLVPKKRQTMLFSATMPKTIADLAGEYLVDPVKVEVTPPGKAADKVEQYV
HFVAGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQ
RERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEAKLLRDIERLMGVDIAVASGEAPANIGSAGPRRGNGNGNNRNRGGGQGRE
AQGRGEGRGDQNRSEHRGSRQERRPRPERTSRNEDFRGQRRGEATPNLGPDNDLVSTSDF
RPSAKPQRPAHGGPNGHHANGEPSGHHRGNGRHAHGRPARKHGEDRGPQQAQGGEPRREG
NGGNRRGGSGSRNGGGQRRERA
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgctccggcgatagtcgttgtggcgccccgaaaggttatgccttgactaatttt
gaatcgcttggtgtctccaagccgatcgtcgccaccttgttccagctcggcatcgaaacg
ccgacgccgatccaggaacaggccatcccccttctcctccagggccgagacctgatcggc
cttgcccagaccggcaccggcaagaccgccgccttcggcctgccgctcatcgaaaagctg
cttgccgacgagcgccgccccgacaaccgcacgacgcggacgctgatcctggcgccgacc
cgcgaactggtgaaccagatcgctgacaacctgaagaagttcatccgcaagtcgcatctg
cgcgtcaacgtcgtcgtcggcggcgtgtcgatcaacaagcagcagctgcagctcgaaaag
ggcaccgatgtcctggtcgcaacgccgggccgcctgctcgatctcgtcaatcgccgcgcc
atcaccctgaccacggtgcggtatctcgtgctcgacgaagccgatcagatgctcgatctc
ggcttcgtgcacgacctgcgcaaaatcgccaagctggtgccgaaaaagcgccagaccatg
ctgttttcggccactatgccgaagacgatcgccgatctcgccggcgaatatctcgtcgat
ccggtcaaggtcgaagtcactccgcccggcaaggctgccgacaaggtcgagcagtatgtc
catttcgtcgccggcaagaacgacaagacggaactgctgcgcaagtcgctgaccgaaaac
cccgatggccgcgccatcgtcttcctgcgcaccaagcatggtgcggagaagctgatgaag
catctcgacaatatcggctattccgtcgcctcgatccacggcaacaagagccagggccag
cgcgagcgggcgctgaaagccttccgcgacggcagcatcaagacgctgatcgccaccgac
gttgccgcccgcggcatcgacatcccggccgtcagccatgtctacaactacgacctgccc
gaagtgcccgacgcctacgtccatcgcatcggccgcacggcgcgcgccggccgcgatggc
atcgcaatcgccttctgcgcccccgacgaagccaagctgctgcgtgatatcgagcgcctg
atgggcgtcgacatcgcagtcgcaagcggcgaagcgccggccaatatcggcagcgccggc
ccccgccgcggcaacggcaatggcaacaaccgcaatcgcggtggcggccagggtcgcgag
gctcagggtcgcggcgaaggccgtggcgatcagaaccgctcggagcatcgcggcagccgc
caggaacgccgtccgcgtcccgagcgcacaagccgcaacgaggatttccgcggccagcgc
cgcggtgaagccacccccaatctcggccccgacaacgatctggtctcgacctccgacttc
cgtccctcggcaaagccgcagcgtcctgcccatggcggccccaatggccatcatgccaat
ggcgagccgagcggtcatcaccgcggcaacggccgccacgcccacggccgcccggcccgc
aagcacggcgaagaccgcggcccgcagcaggcccagggcggcgaaccccgccgcgagggc
aatggcggcaaccgccgcggtggctccggctcccgcaatggcggcggccagcgccgcgaa
cgcgcttga
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