Rhodoblastus sp. SSC7: HZY79_01390
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Entry
HZY79_01390 CDS
T06718
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rhj
Rhodoblastus sp. SSC7
Brite
KEGG Orthology (KO) [BR:
rhj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhj03019
]
HZY79_01390 (hrpB)
Enzymes [BR:
rhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HZY79_01390 (hrpB)
Messenger RNA biogenesis [BR:
rhj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HZY79_01390 (hrpB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QLP96320
UniProt:
A0A7L5XUP6
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All DBs
Position
288510..290981
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AA seq
823 aa
AA seq
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MPAFSTPLPIDAVLPDLARALRGGPNAVLVAPPGAGKTTRVPLALLDEPWAKRGKLIVLE
PRRLAARAAAQRMAQTLGEEVGETVGLRVRLGSKIGPRTRVEIVTEGVFARMILDDPSLD
GVAGVLFDEFHERSLDADLGLALALDAQAGLRDDLRILVMSATLDGARVAALLGAATPVI
ESQGRAFPVETRHVSRDPRARLDEEVGKLALRALAEESGSLLVFLPGQAEISRTAEFLRE
RVRDPAVTIAPLYGAMDRGAQDRAVAPAAPGERKVVLATAIAETSLTIEGVRVVIXSGLA
RAPRFEPDLGLTRLETVRVSRASADQRRGRAGRTQPGVAYRMWEEAATLSLAPYAPPEIL
SADLSGLVLDLAFWGERDPGRLAWLDAPPAPAVAEAKALLRALGALDVDGAITPRGRAIR
ALPLPPRLAAMVTQAAALGEARLAAEVAAVLVERGIGGEGADIAARVERLRRDRSQRAAD
ARRLAQGWARIAGGDRREGGADHAGRMLALAFPTASPXARGAPGAFLMANGRAAQLEPHE
ALARAPXLAVAEIAGRAGAARILAAAALSEDDFQAVAGERIERADELVFDRQAAALRARR
VERLGAITLSEAPLSAAAHEDAPRRLAEGIAALGVGRLPWSKAQTQLRGRVAFLRRAEGE
EWPDLSDAALAAGAADWLAPHLVGKTALSEIGADDLGAALDALLPWDMRRRLDVAAPTHF
EAPTGTRAAVDYEAEAGPTISIRVQELYGLSAHPALAGGRVPLIVELLSPAHRPIQITRD
LPGFWRGSWAGVRSEMKGRYPRHLWPEDPAAAQATTRAKPRGT
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgccggccttttcgacgcccttgccgatcgacgcggttctgcccgacctcgcgcgcgcc
ttgcgcggagggcccaacgccgtgctcgtcgccccgcccggcgccggcaagacgacgcgg
gttcctctcgcgctgctcgatgagccttgggcgaagcgcggcaagctgatcgtgctggag
ccgcgccgtctggcggcgcgggcggcggcgcagcgcatggcgcagacgcttggcgaggag
gtcggcgagacggtcggcctgcgggtgcggctcggctcgaagatcggtccgcgcacgcgc
gtcgagatcgtcaccgaaggcgtgttcgcgcggatgatcctcgacgatccctcgctcgac
ggcgtcgccggcgtgctgttcgacgagttccacgagcgttcgctcgacgccgatctcggc
ctggcgctggcgctcgacgcgcaggcggggctgcgcgacgacttacgcattcttgtgatg
tcggcgacgctcgacggcgcgcgcgtcgccgcgctgctcggggcagcgaccccggtgatc
gaaagtcagggccgcgccttcccggtcgagacgcggcatgtctcgcgcgatccgcgcgcg
cggctcgacgaggaggtcggcaagctcgccctgcgcgcgctggcggaggagagcggctcg
ctgctcgtcttcctgccgggccaggccgagatttcgcgcacggccgaattcttgcgcgag
cgggttcgcgatccggcggtcacgatcgcgccgctctatggcgcgatggatcgcggcgcg
caggaccgcgccgtcgcgcccgccgcgccgggcgaacgcaaggtggtgctggcgacggcg
atcgcggagacctcgctgaccatcgaaggggtgcgcgtcgtcatcgantcggggctggcg
cgggcgccgcgtttcgagcccgatctcgggctgacgcggcttgagacggtgcgggtgtcg
cgcgcctcggccgatcagcgacggggccgcgcgggacgcacgcagcccggcgtcgcctac
cggatgtgggaggaggccgcgacgctgtcgctcgcgccttacgcgccgcccgaaatcctg
tcggcggacctgtccggcctcgtcctcgacctcgctttctggggcgagcgcgatccgggc
cggctcgcctggctcgacgcgccgccggcgccggcggtcgccgaggcgaaggcgcttttg
cgcgcgctcggcgccctcgacgtggacggcgcgatcacgccgcgcgggcgcgcgatccgc
gccctgcccttgccgccgcggctggcggcgatggtgacgcaggccgccgccctcggcgag
gcgcggctcgccgccgaggtcgccgccgtgctggtcgagcgcgggatcggcggcgagggc
gccgacatcgccgcccgcgtcgagcggctgcggcgcgaccgctcgcaacgtgcggccgac
gcgcggcggctggcgcagggctgggcgcggatcgccgggggcgatcgacgcgagggcggc
gccgatcatgccgggcggatgctggcgctcgccttcccgaccgcgtcgccaagngcgcgc
ggcgcgccgggcgccttcctgatggcgaatggccgcgccgcccagctcgaaccgcatgag
gcgctggcgcgggcgcctnntctcgccgtcgccgaaatcgccgggcgcgccggcgcggcg
cggatcctggcggctgcggccttgtcggaggacgattttcaggcggtcgcgggcgaacgc
atcgagcgggcggacgagcttgttttcgaccggcaggcggcggcgctgcgggcgcggcgg
gtcgagcggctcggcgcgatcacgctgagcgaggcgccnctgtcggccgccgcgcatgag
gacgcgccgcggcgtctggcggaggggatcgcggcgctcggcgtcgggcggctgccgtgg
agcaaggcgcagacgcaattgcgcgggcgcgtcgcctttctgcgccgggccgagggcgag
gaatggccggatctttccgacgcggcgctggcggcgggcgcggccgactggctcgccccg
catctcgtcggcaagaccgccttgtcggagatcggcgcggacgatctcggcgcggcgctc
gacgctctcctgccctgggacatgaggcggcggctcgacgtcgcggcgccgacgcatttc
gaagcgccgaccggcacgcgcgcggcggtcgactacgaagccgaggcgggaccgacgatc
tcgatccgggtgcaggagctntacgggctgtcggcccatcccgctttggcgggcgggcgc
gtgccgctgattgtcgagctgctgtcgccggcgcatcggccgatccagatcacccgcgac
ctgccgggcttctggcgcggctcatgggccggcgtgcgctcggagatgaaagggcgctat
ccgcgccatctctggccggaagaccccgccgccgcgcaggcgaccacccgggccaagccg
cgcggaacctga
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