Rhodoblastus sp. SSC7: HZY79_11660
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Entry
HZY79_11660 CDS
T06718
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rhj
Rhodoblastus sp. SSC7
Pathway
rhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HZY79_11660 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhj03019
]
HZY79_11660 (rnr)
03016 Transfer RNA biogenesis [BR:
rhj03016
]
HZY79_11660 (rnr)
Enzymes [BR:
rhj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HZY79_11660 (rnr)
Messenger RNA biogenesis [BR:
rhj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HZY79_11660 (rnr)
Transfer RNA biogenesis [BR:
rhj03016
]
Prokaryotic type
tRNA degradation factors
HZY79_11660 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
DUF983
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QLP97899
LinkDB
All DBs
Position
complement(2465350..2468115)
Genome browser
AA seq
921 aa
AA seq
DB search
MTTPGATTDASGLTADAVRSYIERARVEGGGAVTKRDIARAFDLDSAGKIALKRILKELE
AGGGFVRKGRAVHRAGHLPSIVLCDIVGRDDDGELLAEPAEWDEEHGVPPKILIPAPRKP
RPGEPPPXVGQRALLKIEDNPDSGPPYLGRLVRVIERRAARVLGVYRKSGEGLARIVPVD
KKRADRDLLVPEGAGRDAKDGDLVEVELRKEGRFGPSAAAVVSVVGSLKSEKAISLIAIH
AHGIPDAFRPRTLEEAQAARPATLKGREDWRALPLVTIDPPDAKDHDDAVHAAPDDDPDN
EGGHIVTVAIADVAYYVRPGSGMDREAEERGNSVYFPDRVVPMLPERISNDLCSLRAHED
RPALAVRLVLDRNGRKKRHSFHRVMMRSAAKLSYAQAQAAIDARPDETTAPLLEPVLRPL
WRAYEAAKKARDARQPLDLDLPERKILLKPDGSVDRVVVPERLDAHRLIEEFMIQANVAA
AETLEQKRQLLIYRVHDEPSADKIKALNEFLASINLKLAQGQTLRXAQFNGVLARVKDTE
NETIVNEVVLRSQAQAEYSPENYGHFGLHLKRYAHFTSPIRRYADLIVHRALIAALGLGE
DGLPPVSLDQLAEIAADISGAERRAMAAERETTDRLIAGFLSDKIGARFHGRVAGVIKAG
LFVKLKDTGADGFIPAATLGRDYYAYDERTHALVGAATGETFRLGDDVEVRLLEAAPFAG
ALRFEMLSDGRAGRPLRGLDKRKPGRDGPAGKRGAPLKRGSMKVAAAAANKDFAMTQSPT
MQDAPPDWRAERSLEKRDVWQAMRRGARGRCPACGEGRLFYKYLKVNPSCSVCGERFDGH
RADDAPPYVVITIVGHVVLLGIMLVEERVENFSYLTHLLIWPPIALAMSLALLPGVKGAL
IGLQWALRMHGFGGAPDEKDA
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgactacgcctggcgccacgacggacgcatccggcctcaccgccgacgcggtgcgctct
tacattgaacgcgcccgcgtggaaggcggcggggccgtgacgaagcgtgacatcgctcgc
gccttcgatctggattcggccggcaagatcgcgctgaagcgcatcctcaaggagcttgag
gccgggggcggattcgtccgcaagggccgcgccgtccaccgcgccggccatctgccctcc
atcgtgctttgcgacatcgtcgggcgcgacgacgacggcgaactcctcgcagaacccgcc
gaatgggacgaggagcacggcgtcccgcccaagatcctcatccccgcgccgcgaaaaccg
cgccccggcgagccgccgccgngcgtcggccagcgcgcgcttctgaagatcgaggacaat
cccgactccggcccgccctatctcggccgccttgtccgcgtcatcgagcgccgcgccgcg
cgcgtgctcggcgtctatcgcaagagcggcgagggcctcgcccgcatcgtcccggtcgac
aagaagcgcgccgaccgcgacctgctggtgcccgaaggcgctggccgcgacgccaaggac
ggcgatctggtcgaggtcgaactgcgcaaagagggccgtttcggcccgagcgcggcggcg
gtcgtctccgtcgtcggctcgctgaagagcgagaaggcgatcagcctgatcgccatccac
gcccacggcatccccgacgcctttcgcccccgcacgctggaggaggcgcaggccgcccgc
ccggccacgctcaagggccgcgaggactggcgcgcccttcccctcgtcaccatcgacccg
cccgacgccaaggatcacgacgacgccgtccacgccgcgcccgacgacgatccggacaac
gaaggcggccatatcgtcaccgtcgccatcgccgacgtcgcctattacgtgcgtcccggc
tccggcatggaccgcgaggcggaggagcgcggcaattcggtctattttcccgaccgcgtc
gtgccgatgctgccggagcgcatttcgaacgatctctgctcgctgcgcgcccatgaggat
cgccccgccctcgcggtgcgtctcgtgctcgaccgcaacggccgcaagaagcgccacagc
ttccaccgcgtgatgatgcgctcggccgccaaactctcctacgcgcaggcgcaggccgcg
atcgacgcccgcccggacgagacgaccgcgcccttgctcgaacccgtgctgcgcccgctc
tggcgcgcctacgaagccgcgaagaaggcgcgcgacgcccgccagccgctcgatctcgac
ctccccgaacgcaagatcctgctgaagcccgacggctcggtcgaccgcgtcgtcgtgccc
gagcggctcgacgcccatcgcctgatcgaagagttcatgatccaggccaacgtcgccgcc
gccgagacgctggagcagaagcgccagctcctgatctaccgtgtccatgacgagccgagc
gccgacaagatcaaggcgctgaacgagtttctggcctcgatcaacctcaagctggcccag
ggccagacgctgcgcnccgcccagttcaacggcgtgttggcgcgcgtgaaggacaccgag
aacgaaaccatcgtcaacgaagtggtgctgcgctcgcaggcgcaggccgaatattcgccc
gagaattacgggcatttcggcctgcatctcaaacgctacgcgcatttcacctcgccgatc
cgccgctacgccgatctcatcgtccaccgcgctctgatcgccgcgctgggcctcggcgag
gacggcttgccgcctgtcagcctcgaccagctcgccgagatcgccgccgacatctccggc
gccgagcgccgcgccatggccgccgagcgcgagacgaccgaccggctgatcgccggcttc
ctgtccgacaagatcggcgcgcgctttcatggccgcgtcgccggcgtcatcaaggccggg
ttgttcgtcaaactgaaggacaccggcgccgacggcttcatccccgccgccacgctgggg
cgcgactattacgcctatgacgagcgcacacatgcgcttgtcggcgcggcgaccggcgag
accttccgcctcggcgacgacgtcgaggtgcgcctgctcgaagccgcgcccttcgccggc
gcgctgcgtttcgaaatgctgtcggacgggcgcgccggccgcccgctgcgcggcctcgac
aagcgcaagcccggccgcgacggacccgccggcaagcgcggcgcgccgctcaagcgcggc
tccatgaaggtcgcggccgcggccgccaataaggatttcgccatgacgcaaagcccgacg
atgcaggacgcgccgcccgactggcgcgccgaacgcagcctcgaaaagcgcgacgtctgg
caggcgatgcggcgcggcgcgcgcggccgctgcccggcctgcggcgaaggccggctcttc
tacaaatatctgaaggtgaacccgtcctgctccgtctgcggcgagcggttcgacggccat
cgcgccgacgatgcgccgccttatgtcgtcatcaccatcgtcggccatgtcgtcttgctg
gggatcatgctggtcgaggagcgcgtcgagaatttctcttatctgacgcatctgctgatc
tggccgccgatcgctttggcgatgagtctggcgctgctgccgggcgtcaaaggcgcgctg
atcggcctgcaatgggcgctgcgcatgcacggtttcggcggcgcgcccgacgaaaaggac
gcatag
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