Rhodoblastus sp. SSC7: HZY79_11895
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Entry
HZY79_11895 CDS
T06718
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhj
Rhodoblastus sp. SSC7
Pathway
rhj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HZY79_11895 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhj03400
]
HZY79_11895 (mfd)
Enzymes [BR:
rhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HZY79_11895 (mfd)
DNA repair and recombination proteins [BR:
rhj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HZY79_11895 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QLP98850
UniProt:
A0A7L5Y238
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All DBs
Position
2516699..2520340
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AA seq
1213 aa
AA seq
DB search
MRSVQPNPLLRSAVSQLEAGASLTLSLTPDGFDAFLAADLTRALAAHADDRTAALAHVAR
DGRRAQAFEEALRFAAPEIEIVSFPAWDCQPYDRVSPNAAIAAQRMTALARLARTKASAQ
RPRLVSTTVNAILQRTPPLDWTRAQSLSAAPGNALDMDELVRWLEAHGFLRSSTVRETGE
YAVRGGILDLQAPGWAAPLRLDFFGDTLESIRAFDPETQRTTTQARSLDLVPMSEVQLTS
DTMRAFRQAYLTEFGANTRGDGLYEAISEGRRFPGMEHWAPLFLGRMDTLFDYLGDAPVL
LDRLAEEAAGERFALIKDYYEARREAHEKDPANAPYKPLKPEALYLSDAEWRRRLDGTAT
ARLTPFALPASPATIEMGGRAGRSFAAERADENANVFEAVVGHIRALQDENKRVLVAGWS
DGSRERLATVLHDHGLTQTETVATLAQAMAVGAPKVALGVLPLEQGFVVGDLAVIGEQDI
LGDRLAAGRKKRRRAQDFLSEVAALTPGDLVVHVDYGIGRFVSLKQIEAAGAPHDVLELH
YADGQKLFLPVENLELLSRYGSEETEVQLDRLGGLGWQQRKARMKKRIREIAHELVKVAA
ERMLRKAPKLVPPPGLYDEFAARFPYEETEDQEGAIEATLDDLAAGKPMDRLVCGDVGFG
KTEVALRAAFAAASNNKQVAVVVPTTLLARQHTRTFTERFAGLPIKIAQLSRMAGAAEQX
AAKAGLADGSVDIVVGTHAVLGKTVSFKDLGLVIVDEEQHFGVNHKERLKSVRSEAHVLT
LSATPIPRTLQLAMTGVRDLSIIATPPVDRLAVRTFISPFDPLTIREALLRERYRGGQSX
YVAPRIEDLDDVTKFLREHVPEAKFIVAHGQMTPTELEEKMTAFYEGKADILVSTTIVES
GLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSKQRAYALFTLPAKKQITAQAERRLKVL
QSLDTLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELXQQMLQDAIELLKAGVEET
AEEIWSPAISIGAPVTIPEDYVADLTLRLQLYKRLSSMDTDEEIESFGAEVVDRFGPAPD
EVKQLMKLMSIKALCRRAHVEKVDAGPKGVVIAFRDNSFANPAGLVKFVAGEGLRAXVRP
DMKIVFVREWESAEERLAGTQRILRTLVALAEGKAVAFKAPPPPPPPPPPHGPVASCGAA
GFALNPLRGKFRR
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgcgatccgtgcagccgaatccgctcctgcgctccgccgtctcgcagctcgaagctggc
gcgagcctcacnctttcgctgacgccggacgggttcgacgcctttctcgccgccgacctg
acgcgggcgctggccgcgcatgccgacgatcggacggcggcgctggcgcatgtggcgcgc
gacggacggcgcgcgcaggcgttcgaggaggcgctgcgtttcgccgcgccggagatcgag
atcgtctcctttccggcctgggactgccagccttacgatcgggtgtcgcccaacgccgcc
atcgccgcgcagcgcatgacggcgctggcgcgtttggcgcgcaccaaggcntcggcgcag
cgcccgcgcctggtctcgaccaccgtcaacgcgatcctgcaacgcacgccgccgctcgac
tggacgcgggcgcaatcgctgtcggccgcgcccggcaacgcgctcgacatggacgagctg
gtgcgctggctcgaagcgcatggcttcctgcgctcctcgacggtgcgcgagaccggcgaa
tacgcggtgcggggcggcattctcgacttgcaggcgccgggatgggcggcgccgctgcgg
ctcgacttcttcggcgacacgctggaatcgatccgcgccttcgatcccgagacgcagcgc
acgacgacgcaggcgcgttcgctcgatctcgtgccgatgagcgaggtgcaactcacctcc
gacacgatgcgcgccttccggcaggcctatctgaccgaattcggcgccaacacgcgcggc
gacggtctgtatgaggcgatcagcgaggggcggcggtttcctggcatggagcactgggcg
ccgctattccttgggcggatggacacgctgttcgactatctcggcgacgcgccggtgttg
ctcgaccggctggccgaggaagccgccggcgaacgcttcgcgctgatcaaagattattac
gaggcgcggcgcgaggcgcatgagaaagacccggcgaacgcgccttacaagccgctgaag
ccggaggcgctctatctgtcggacgccgaatggcggcgccgtctcgacgggacggcgacg
gcgcgcctgacacccttcgctctgccggcttcaccggcgacgatcgaaatgggcgggcgt
gcgggtcgcagcttcgccgccgagcgcgcggacgagaacgccaatgtgttcgaggcggtg
gtcggccatatccgcgcgcttcaggacgagaacaagcgcgtgctggtggcgggatggtcg
gacgggtcgcgcgagcgnctcgccaccgtgctgcacgatcacggcctgacgcagaccgag
accgtggcgacgctggcgcaggcgatggcggtcggcgcgcccaaggtcgcgctcggcgtg
ttgccgctggagcaaggtttcgtcgtcggcgatctcgcggtgatcggcgagcaggacatt
ctgggcgaccggctcgcggccggccgtaagaagcggcggcgcgcgcaagatttcctgtcg
gaggtcgcggcgctgacgccgggcgatctcgtcgtgcatgtcgattacggcatcgggcgt
ttcgtcagcctgaagcagatcgaggcggcgggcgcgccgcacgacgtgctggagctgcat
tacgccgacggccagaagctgttcctgccggtcgaaaatctcgaactgctgtcgcgctac
ggcagcgaggagaccgaggttcagctcgaccgtctcggcgggctgggctggcagcagcgc
aaggcgcggatgaagaagcgcatccgcgagatcgcgcatgagctggtgaaggtggccgcc
gagcggatgttgcgcaaggcgcccaagctggttccgccgccgggcctctatgacgaattc
gcggcgcgctttccctatgaggagaccgaggatcaggagggcgccatcgaggcgacgctc
gacgatctggccgccggcaagccgatggatcgtctcgtgtgcggcgacgtcggcttcggc
aagacggaggtggctttgcgcgcggccttcgcggcggcgtcgaacaacaagcaggtcgcc
gtggtggtgccgacgacgctgctggcgcgccagcacacgcgcaccttcaccgagcgcttc
gccggcctgccgatcaagatcgcgcagctttcccgcatggcgggcgcggccgagcaaagn
gccgccaaggccggcctcgccgacggttcggtcgacatcgtggtcggcactcacgcggtg
ctcggcaagacggtgtcgttcaaggatcttggcctcgtcatcgtcgacgaggagcagcat
ttcggcgtcaaccacaaggagcgcctcaagagcgtgcgcagcgaggcgcatgtgctgacg
ctttcggcgacgccgatcccgcgcaccttgcaactcgccatgacgggcgtgcgcgatctg
tcgatcatcgcgacgccgccggtcgaccgtctggcggtgcgcaccttcatctcgcccttc
gatccgctgacgatccgcgaggcgctgctgcgcgaacgctatcgcggcggccagagcttn
tacgtcgcgccgcgcatcgaggatctcgacgatgtgacgaaattcctgcgcgagcatgtg
ccggaggcgaaattcatcgtcgcccacgggcagatgacgccgaccgaactcgaagagaag
atgacggccttctacgagggcaaggccgatattctggtgtcgacgaccatcgtggagtcc
ggcctcgacattccgaccgccaacacgctgatcgtgcatcgcgccgacatgttcggcctg
gcgcagctctatcaactgcgcggccgcgtcgggcgctcgaagcagcgcgcttacgctttg
ttcaccctgccggcgaagaaacagatcaccgcgcaggcggagcggcggctgaaagtgttg
cagtcgctcgacacgctgggcgcgggcttccagctcgccagccacgatctcgacattcgc
ggcgccggcaatctgctcggcgacgaacagtccggccatatcaaggaagtcggctacgag
ctgnnccagcagatgttgcaggacgcgatcgagctgttgaaggcgggcgtcgaggagacg
gcggaggaaatctggtcgccggcgatctcgatcggcgcgccggtgacgatcccggaggat
tacgtcgccgacctgacgctgcggttgcagctctacaagcgcctgtcgtcgatggacacg
gacgaggagatcgagagcttcggcgcggaggtggtcgaccgcttcggcccggcgcccgac
gaggtcaaacagctgatgaagctgatgtcgatcaaggcgctgtgccggcgcgcccatgtc
gagaaggtcgacgccggcccgaagggcgtggtcatcgccttccgcgacaattccttcgcc
aatccggcggggctggtgaaattcgtcgccggcgagggcctgcgcgccagngtgcggccg
gacatgaaaatcgtgttcgtgcgggaatgggagagcgccgaggagcggctcgccggcacg
cagcggattctgcgcacgctggtcgcgctggcggagggcaaggccgtcgcgttcaaggcg
ccgccgcctccgccgcctccgccgcccccgcacggccccgtcgcgtcctgcggggcggcc
gggttcgccctcaatccgcttcgtggtaagttccggcgatga
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