Rhodoblastus sp. SSC7: HZY79_13720
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Entry
HZY79_13720 CDS
T06718
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rhj
Rhodoblastus sp. SSC7
Pathway
rhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HZY79_13720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhj03019
]
HZY79_13720
Enzymes [BR:
rhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HZY79_13720
Messenger RNA biogenesis [BR:
rhj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HZY79_13720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
TrAA12
AAA_22
HEM4
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QLP98885
UniProt:
A0A7L5Y268
LinkDB
All DBs
Position
complement(2895641..2897176)
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AA seq
511 aa
AA seq
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MTNFSDLGLAEVVLRAFTHEGYTSPSPIQAQAIPPVLAGRDLLGLAQTGTGKTAAFAAPL
LTRLLADARRPAPKQARVLVLAPTRELAAQIADSFKAYARFARMHVATVFGGVGFSPQAK
ALARGVDVLVATPGRLLDHLDQRTVDLSATRYVVLDEADHMLDLGFVKPIRQILSRLPKE
RQNLFFSATMPSEISGLAGEMLRDPVQVAVAPAARTADRVAQKIIFVETAAKRDLLADML
SDPSYQRTIVFTRTKRGADRVAQHLEARGVEAVAIHGNKSQGARQKALDGFKTGQVRVLV
ATDIAARGIDVDAVSHVINFELPDVPEAYVHRIGRTARAGLEGDAISFCADEERDLLRQI
ERTTKQSIPSEDRRSRRAGAPAGEDAQARAPRREGRFDGEGRGRRPSQGQGRRQAQGQGQ
GQGQGRGQGQGEPEGRGQRPAAPGRARMPAAAPRSEAAPSGARPFRLQADKRRADEPRGE
RPQDDARNRPPRRRRRPGQGEGAPRGEARGA
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaatttttcggatctcggcctcgccgaggtcgttctgcgcgccttcacgcatgaa
ggctatacctctcccagcccgattcaggcgcaggcgattccgccggttctggccggccgc
gaccttctcggtctcgcccagaccggcaccggcaagaccgccgccttcgcagcgccgctg
ctgacgcgcctgctcgccgacgcgcgccgccccgcgcccaaacaggcgcgcgtgctggtg
ctcgccccgacgcgcgaactcgccgcccagatcgccgactccttcaaggcctacgcccgt
ttcgcgcggatgcacgtcgccaccgtgttcggcggcgtcggcttctcgccccaggccaag
gcgctggcgcgcggcgtcgacgtgctcgtcgccacgcccggccgcctgctcgaccatctc
gaccagcgcaccgtcgacctgtcggccacgcgctacgtggtgctcgacgaagccgatcac
atgctcgacctcggcttcgtgaagccgatccgccagattctgtcgcgtcttccgaaggag
cgccagaacctgttcttctcggccaccatgccgtcggagatctccggcctcgcaggcgag
atgctgcgcgatccggttcaggtcgccgtcgcgccggccgcccgcaccgccgaccgcgtc
gcgcagaagatcatcttcgtcgagaccgccgccaagcgcgatctgctcgccgacatgctg
tccgatccgagctatcagcgcaccatcgtcttcacccgcaccaagcgcggcgcggaccgc
gtcgcccagcatctcgaagcccgcggcgtcgaggcggtcgccatccacggcaacaagagc
cagggcgcgcgccagaaggcgctcgacggcttcaagacgggccaggtgcgcgtgctcgtc
gccaccgacatcgccgcgcgcggcatcgacgtcgacgccgtgagccacgtcatcaatttc
gaattgcccgacgtgccggaagcctatgtgcatcgcatcggccgcaccgcgcgcgccggt
ctcgaaggcgacgcgatctccttctgcgccgacgaggaacgcgatctgctgcgtcagatc
gaacgcaccaccaagcagtcgattcccagcgaggatcgccgctccaggcgcgccggcgcg
cccgccggcgaggacgcgcaggcccgcgcgccgcgccgcgaaggccgcttcgacggcgag
ggccgcggccgccgcccgtcgcagggtcaagggcgcaggcaagcgcagggccaagggcag
gggcagggccaggggcgcgggcaggggcaaggcgagccggaaggccgtggccagcgcccc
gccgcgccaggccgcgcccgtatgcccgcggccgcgccgcgcagcgaggcggcgccgtcc
ggcgcgcgtcccttccgccttcaggccgacaagcgccgcgccgacgaaccgcgcggcgag
cgcccgcaagacgacgcgcgcaaccggccgccgcgccggcgccggcgtcccggccagggc
gagggcgcgccgcgcggcgaagcgcgcggggcctga
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