Rhodococcus sp. JS3073: OYT95_15125
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Entry
OYT95_15125 CDS
T10731
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rhjs Rhodococcus sp. JS3073
Brite
KEGG Orthology (KO) [BR:
rhjs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhjs03032
]
OYT95_15125 (topA)
03400 DNA repair and recombination proteins [BR:
rhjs03400
]
OYT95_15125 (topA)
Enzymes [BR:
rhjs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OYT95_15125 (topA)
DNA replication proteins [BR:
rhjs03032
]
Prokaryotic type
DNA Topoisomerases
OYT95_15125 (topA)
DNA repair and recombination proteins [BR:
rhjs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OYT95_15125 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
HC2
SPESP1
Motif
Other DBs
NCBI-ProteinID:
WAM17888
LinkDB
All DBs
Position
complement(3356194..3359112)
Genome browser
AA seq
972 aa
AA seq
DB search
MAKGDNGSAQGAAGASGQPRRLVIVESPTKARKIAPYLGKNYVVEASVGHIRDLPRGAAD
VPAKYKGESWARLGVNVDHDFEPLYVVSPEKKSKVTELKSLLKDADELFLATDPDREGEA
IAWHLLETLKPKIPVRRMVFHEITEPAIRAAAEDTRELDNDLVDAQETRRILDRLYGYEV
SPVLWKKVMPRLSAGRVQSVATRVIVQRERERMAFRSASYWDISATLDAGAEASPRSFGA
RLVSVDGSRVATGRDFGADGQLKTSTVTVLDEARAQRLAESLAGVDLTVSSAESKPYTRK
PYAPFMTSTLQQEAGRKLRFTSERTMRIAQRLYENGYITYMRTDSTTLSSSAIAAARAQA
TELYGAEYVHDTPRQYTRKVKNAQEAHEAIRPAGDVFQTPGQLHSRLDTDEFRLYELIWQ
RTVASQMADARGTTLTLRITGTAGTGEECTFSASGRTITFAGFLKAYVESVDEEAGGQSD
DAESRLPVLVEGQAVTATKLDPDGHTTNPPARYTEASLIKTLEELGIGRPSTYSSIIKTI
LDRGYVYKRGSALVPSWVAFAVIGLLEMHFGRLVDFDFTAGMEDDLDAIAGGREQRGNWL
SSFYFGGDHGAEGSVAREGGLKKMVGVNLEEIDAREVNSIRLFDDAEGREVHVRVGRFGP
YLERMVQNPDDPEGDLISQRANLPDDLPPDELTPEYAEKLFSTPQEGRKLGVDPLTGHEI
VAKEGRFGPYVTEILPEPEPEPEPAVVPVTDESGDGTTKTKTAAKKAPAKKAAKKATGPK
PRTGSLLKSMDLATVTLDDALKLLSLPRVVGVDPESKEEITAQNGRYGPYLKKGTDSRSL
ATEDQMFTVTLDEALKIYAEPKRRGRQAAATPPLRELGVDSVSEKPMVIKDGRFGPYVTD
GETNASLRKGDEVESITDARASELLADRRARGPVKKKAAAKKAPAKKAAKKTAAKKAPAK
KAAAKKAADKKA
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
gtggctaaaggggacaacggcagtgcacagggtgcggcgggagcgtccggccagcctcgc
cgcctcgtgatcgtcgagtcgccgaccaaggcccgcaagatcgccccgtacctcggaaag
aactacgtcgtcgaggcgtcggtcggccacatccgcgaccttccacgcggagccgcagac
gtcccggccaagtacaagggtgagtcgtgggcgcggctcggcgtcaacgtcgaccatgat
ttcgaaccgctctacgtggtcagtccggagaagaagtccaaggtcacggagctgaaaagc
ctcctcaaggacgccgacgaactcttcctcgccaccgaccccgaccgcgagggcgaagcg
atcgcctggcacctcctcgagacgctcaaaccgaagattccggttcgccggatggtcttc
cacgagatcaccgagccggccatccgcgccgcggccgaggacacccgcgaactcgacaac
gacctggtcgacgcgcaggagacccgccgcattctcgaccgtctgtacggctacgaggtc
agccccgtgctgtggaagaaggtcatgccgaggctgtcggcaggccgcgtgcagtccgtc
gccacccgcgtcatcgtgcagcgggaacgcgagcggatggcgttccgctcggcgtcctac
tgggacatctccgccaccctcgacgccggcgccgaggccagcccccgcagtttcggggcg
cgcctggtgagcgtcgacggctcccgggtggccaccggccgcgacttcggcgcggacggc
cagctgaagacgagcaccgtcacggttctggacgaggcgcgggcgcagcgtctggccgag
tccctcgccggtgtcgacctcaccgtctcctccgccgagagcaagccgtacacccgcaag
ccgtacgcgccgttcatgacgtcgacgctgcagcaggaggcgggccgcaagctccgcttc
acgtccgagcggaccatgcgcatcgcgcagcggctgtacgagaacggctacatcacctac
atgcgtaccgactcgacgacgctgtcgtcgtcggcgatcgctgccgcccgcgcgcaggcc
accgagttgtacggcgccgagtacgtgcacgacacaccgcgccagtacacgcgcaaggtc
aagaacgcgcaggaggcgcacgaggccatccgccccgccggcgacgtgttccagaccccc
ggtcagctgcattcccgcctcgacaccgacgagttccgtctgtacgagctgatctggcag
cgcaccgtggcgtcgcagatggccgacgcgcggggcacgacgctgaccctgcggatcacc
ggaaccgcgggcaccggcgaggagtgcaccttctccgcatcgggccgcaccatcacgttc
gccgggttcctgaaggcctacgtggagagcgtcgacgaggaggccggcggccagtccgac
gacgccgagtcgcgcctgccggtgctcgtcgagggtcaggcggtcaccgccaccaaactc
gatcccgacggtcacaccaccaacccgcccgcccgctacaccgaggcgagcctgatcaag
accctcgaagaactgggcatcggccgcccgtccacgtattcgtcgatcatcaagacgatt
ctcgatcgcggatacgtctacaagcgcggcagcgcgctggtcccgtcctgggtggcgttc
gccgtcatcggcctcctcgagatgcacttcgggcggttggtcgacttcgacttcaccgcc
gggatggaagacgatctcgacgcgatcgccggtggccgcgaacagcgcggcaactggctg
agcagtttctacttcggcggcgatcacggcgccgagggttcggttgcccgtgagggcggc
ctgaagaagatggtcggcgtcaacctcgaggagatcgatgctcgcgaggtcaactcgatc
aggctcttcgacgacgccgagggacgggaagtgcacgtccgggtcggacggttcggtccg
tacctcgagcggatggtccagaacccggacgaccccgagggcgacctcatctcccagcgg
gccaacctgcccgacgaccttccgccggacgagctgacaccggagtacgcggagaagctc
ttttcgactccgcaggagggccgcaagctgggcgtcgacccgctcaccgggcacgagatc
gtcgcgaaggagggccgcttcggcccgtacgtcacagagatccttcccgagccggaaccg
gagcccgaaccggcagtggtgccggtgaccgacgaatcgggcgacgggacgaccaagacg
aagacggcagccaagaaggcgccggcgaagaaggcggcgaagaaggccaccggtccgaag
ccgcggacgggctcgctgctcaagtcgatggacttggcgacggtgaccctcgacgacgcc
ctcaagctgctgtcgctgccgcgggtggttggcgtcgatccggagtccaaggaagagata
accgcgcagaacggtcgctacggcccgtatctgaagaaggggacggattcgcggtccctc
gccaccgaggaccagatgttcacggtgaccctcgacgaggctctgaagatctacgcggag
cccaagcgccgcggacgtcaggccgccgccaccccgccactgcgtgagctgggtgtcgac
tcggtcagcgagaagccgatggtgatcaaggacggccggttcgggccgtacgtgaccgac
ggtgaaaccaacgccagcctccgcaagggcgacgaggtggagtccatcaccgacgcccgc
gcttcggaactgctggcggatcggcgtgcccgcggtcccgtcaagaagaaggccgccgcg
aagaaggcgcccgccaagaaggccgcaaagaagaccgccgccaagaaggcgccggccaag
aaagcggccgcgaagaaggcagcggacaagaaggcgtga
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