Rhodococcus sp. JS3073: OYT95_29540
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Entry
OYT95_29540 CDS
T10731
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhjs Rhodococcus sp. JS3073
Pathway
rhjs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhjs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
OYT95_29540 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhjs03400
]
OYT95_29540 (recD)
Enzymes [BR:
rhjs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
OYT95_29540 (recD)
DNA repair and recombination proteins [BR:
rhjs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
OYT95_29540 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
UvrD-helicase
AAA_11
Viral_helicase1
Helicase_RecD
SH3_13
AAA_22
TraI_hel_assoc_N
UvrD_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WAM13542
LinkDB
All DBs
Position
6508510..6510378
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AA seq
622 aa
AA seq
DB search
MTEVQVAQRGKGMLRIFNEAGVLAAADVHVALRLSALGGESSEDVVLATALAVRAVRSGS
VCLDLTRIREVTVDEESEVDLDALPWPDDGTVVEALRRSPLVTGGSAGPLRPLRLVDTAE
GGLLYLDRYFRQEATIRRVLDQRAVGYPLVDEQSLREGLDVLFRDQHDHGAPSPSPDRQR
IAAAVAATQWTSVVVGGPGTGKTHTVARVLALLIRQPGPGLRIALAAPTGKAAARLQESV
REQSDALGLPSDLTAMTLHRLLGWQRGRGSRFRYNANNHLPYDAIVVDETSMVSLTMMCR
LLEAVRPDTRLVLVGDPDQLTSVDAGAVLADLVARPVTGTENPVLTRIVGDDLEAADDPL
EAALSAGERDRVRGGVVRLSRGRRFGGGIAQLAVAVRNGEPDEVMKILSSGAPEVSFHGP
EDLDALRADVVGTAAAVTGSAESGDAFAALRHSEEHRLLCAHREGPYGVQRWARQAMEWI
GEATGQRLNPDRWYPGQPLMVTANDHETKIYNGDTGVIVRRDDDELVAAFVRGSEPFLLH
PTHLSAVQTVYAMTIHRSQGSQYDTVSVVLPGEASSLLTRELLYTAITRARQHVRIIGSE
DAVRAGVQRRVLRASGLRRAIP
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggtgcaggtggcgcagcgcggcaaggggatgctgcggatcttcaacgaggcc
ggtgtgctggccgccgcggacgtgcacgtcgcgttgcggttgtcggcgctcggcggcgaa
tcctcggaagacgtcgtattggcgaccgcgctggcggtgcgcgcggtgcggtccggttcg
gtgtgcctcgacctcacgcggatccgcgaagtgaccgtcgacgaggagtccgaagtcgat
ctcgacgcgctgccctggccggacgacggcaccgtcgtcgaggcactgcggcggagtccg
ctggtcacgggcggttcggccggaccgctgcgaccgctgcggctcgtcgacaccgccgag
ggcgggctgctctacctcgaccggtacttccggcaggaagcgaccatccggcgggtactc
gaccagcgcgccgtcgggtatcccctcgtcgacgagcagtcgctgcgggaggggctggac
gtgttgttccgcgaccagcacgaccacggggcgccgtctccgtcgccggatcggcagcgg
atcgccgccgcggtcgccgccacacagtggacgtcggtggtggtcggcggacccggaaca
ggtaagacgcacactgtcgcccgggtgctggcgctgctgatcagacagcccgggccgggg
ctgcgtatcgcgctcgccgcacccaccgggaaggccgcggcgcggttgcaggagtcggtg
cgcgagcagtccgacgcactcgggttgccgtccgacctgactgcgatgacgctgcatcgg
ctgctgggctggcagcgcggacgcggcagccggttccgctacaacgcgaacaatcacctg
ccctacgacgcgatcgtggtcgacgagacgtcgatggtgtcgctgacgatgatgtgccgg
ctcctcgaagcggtccgcccggacactcggctggtgctcgtcggcgaccccgatcagctg
acgtccgtcgacgcgggcgcggtcctggccgatctcgtggcccggccggtgacgggaacc
gagaatccggtgctcaccaggatcgtcggcgacgacctcgaggccgccgacgacccgctc
gaggccgccttgagtgcgggagaacgggacagagtgcgtggcggtgtggtccggctcagc
cgcgggcgtcggttcggcggcggcatcgctcagctggctgtcgcggtgcggaacggcgag
ccggacgaggtcatgaagatcctgtcgagcggtgcccccgaggtgtcgttccacggtccg
gaagacctggacgcactgcgggcggacgtggtggggacggctgccgcggtcaccgggtct
gcggaatccggtgatgcctttgctgcccttcggcattcggaggagcaccggctgttgtgc
gcgcaccgggaaggtccgtacggcgtgcagcggtgggcgcggcaggcgatggagtggata
ggggaggcgacggggcagcggctgaacccggatcgctggtatccgggccagccgctgatg
gtgactgccaatgatcacgaaacgaagatctacaacggcgacaccggggtgatcgtgcgc
cgcgacgacgacgaactcgtcgccgccttcgtgcgcggcagcgaaccgttcctgctgcac
ccgacgcatctgtccgcggtgcagacggtgtacgcgatgacgattcaccgcagtcagggc
agccagtacgacacggtgtccgtggtacttcccggcgaggcgtcgtcgctgctgactcgc
gaattgctgtacaccgcgatcacccgggcacggcagcacgtgcggatcatcgggtccgag
gatgcagtgcgggcgggagtgcaacgccgggtgctgcgggcgagtgggctccggagggcg
attccgtag
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