Rhizobium sp. Kim5: Kim5_CH00108
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Entry
Kim5_CH00108 CDS
T05501
Name
(GenBank) ribonuclease D protein
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rhk
Rhizobium sp. Kim5
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhk03016
]
Kim5_CH00108
Enzymes [BR:
rhk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Kim5_CH00108
Transfer RNA biogenesis [BR:
rhk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Kim5_CH00108
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ARQ56236
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All DBs
Position
118126..118752
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AA seq
208 aa
AA seq
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MAATIRYHEGDISAADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGNGTADVIRIAAG
QKEAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLIRTYTDRHGL
KDNLKEMLDIDISKTQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDH
ATACFEFLPTRAKLDLLGWEEADIFAHS
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaccatacgttatcacgaaggcgatatatcggcggccgatgccgcccgctac
accggcgcggtagctatcgacaccgaaacgctcggcctggtgccgcgccgcgatcggctc
tgcgtcgtccagctttcgccgggtaacggcaccgccgacgtcatccgtatcgccgccggc
cagaaagaggcgcccaacctggtcgccctgctcgaagatccgacccatcagaaaatcttt
cactatggccgcttcgatattgccgtgctcttccacactttcggcgtcacgacgaccccg
gtcttctgcaccaagatcgcctcgcgcctgatccggacctacaccgatcgccatggtttg
aaggacaatctcaaggagatgctcgacatcgacatctccaagacgcagcaatcttccgac
tgggcggccgaaacactgtctccggcccagctcgaatatgccgcttccgacgtgctttac
ctgcatgctttgcgcgacaagctgaccgcgcgcctgatccgcgacggccgcttcgaccat
gccaccgcctgcttcgaattcctgccgacccgcgccaagctcgacctgctcggctgggaa
gaggccgatatcttcgcccatagctga
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