Rhizobium sp. Kim5: Kim5_CH00125
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Entry
Kim5_CH00125 CDS
T05501
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kim5_CH00125 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhk03019
]
Kim5_CH00125 (pnp)
03016 Transfer RNA biogenesis [BR:
rhk03016
]
Kim5_CH00125 (pnp)
Enzymes [BR:
rhk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Kim5_CH00125 (pnp)
Messenger RNA biogenesis [BR:
rhk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Kim5_CH00125 (pnp)
Transfer RNA biogenesis [BR:
rhk03016
]
Prokaryotic type
tRNA degradation factors
Kim5_CH00125 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
ARQ56252
LinkDB
All DBs
Position
complement(132531..134669)
Genome browser
AA seq
712 aa
AA seq
DB search
MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT
VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH
DLENNPDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA
GTYDAVLMVESEAKELPEDVMLGAVMFGHRGFQPVLDAIIKLAEVAAKEPRDFQPEDYSA
LESEMLGLAEAELREAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKH
LQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG
EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAE
QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS
DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGGRKHILGEMAK
AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS
SSGKEIEAARKWIHSIVAEPEIGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV
AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEIANEKKKEEAAE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatacacacaccgtggaaatcgagtgggccggccgcccgctgaagcttgaaacc
ggcaagatcgcccgccaggccgatggcgcggttctcgccacctacggcgagaccgtcgtt
ctcgccaccgtcgtttcggccaaggcgccgaagcccggccaggacttctttccgctgacc
gtcaactaccaggaaaagacctacgcagccggcaagatccctggcggctatttcaagcgc
gaaggacgcccgagcgaaaacgagaccctcgtttcccgcctgatcgaccgcccgatccgc
ccgctcttcccggaaggctacaagaacgacacccaggtcgtcgtcaccgtcatccagcac
gaccttgaaaacaaccccgacatcctgtcgatggtcgcgacctcggcagcgctgacgctc
tccggcgttcccttcatgggcccggtcggcggtgcgcgcgtcggctacatcaatggcgaa
tatgttcttaacccgcatctcgacgagatggacgagtcgagcctcgacctcgtcgtcgcc
ggcacctacgacgccgtgctgatggtcgaatccgaagccaaggaactgcccgaggacgtc
atgctcggcgccgtcatgttcggccacaggggtttccaaccggttctcgatgcgatcatc
aagctcgccgaagttgccgccaaggagccgcgcgacttccagccggaggactattccgcg
ctcgaaagcgaaatgctcggcctggcggaagccgaattgcgtgaagcctacaagatcacc
cagaaggccgaccgctacgccgccgtcgacgccgtcaaggcaaaggtgaaggcgcatttc
ctccccgaggaaggcgaagccaagtacacggccgaggaagtcggcgcgatcttcaagcac
ctgcaggccaagatcgtccgctggaacatcctcgataccaagagccgtatcgacggccgc
gacctcgaaaccgttcgtccgatcgtttcggaagtcggtcttctgccgcgcacccacggt
tcggcgctgttcacccgcggcgaaacccaggcgatcgtcgttgccacgctcggcaccggc
gaagacgaacagtatgtcgacagcctgacgggcatgtacaaggagcgcttcctgctccat
tacaacttcccgccttactccgtcggcgaaaccggccgcatgggctccccgggccgccgc
gaaatcggccacggcaagcttgcatggcgcgccatccgtccgatgctgccgtcggccgag
cagttcccatacacgctgcgcgtcgtctccgagatcaccgagtcgaacggctcgtcctcg
atggcaaccgtctgcggcacctcgctcgccctgatggatgccggcgttccgcttgccaag
ccggttgccggcatcgccatgggcctgatcctcgaaggcgaccgcttcgccgttctctcc
gacattctcggtgacgaagaccacctcggcgacatggacttcaaggttgctggtacggcc
gacggcattacctcgctgcagatggacatcaagatcgccggcatcaccgaagagatcatg
aaggtcgcgctcggccaggcccagggcggccgcaaacacatcctcggcgaaatggccaag
gccattaccgaaagccgcggccagcttggcgaattcgcgccgcgcatcgaagtcatgaac
attccggtcgacaagatccgcgaggtcatcggctctggcggcaaggtcatccgcgaaatc
gtcgaaaagaccggtgcgaagatcaacatcgaggacgacggcaccgtcaagatcgcctcc
tcttccggcaaggaaatcgaagcggcccgcaagtggatccactcgatcgttgccgagcct
gaaatcggccagatctacgaaggcacggttgtcaagaccgccgacttcggcgccttcgtc
aacttcttcggcgcccgcgacggcctcgtccatatctcgcagctcgcttccgagcgcgtt
gccaagacgcaggacgtcgtcaaggaaggcgacaaggtctgggtcaagctgctcggcttc
gacgaacgcggcaaggttcgcctgtcgatgaaggtcgtcgaccaggccaccggccaggag
atcgcgaacgagaagaagaaggaagaagcggccgaataa
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